Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq21107 141 7e-29 seq17817 107 1e-18 seq68991 104 2e-17 seq32426 100 2e-16 seq14450 82.4 6e-11 >seq21107 Length=15695 Score = 141 bits (156), Expect = 7e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| ||||| || || || || || ||||| || || |||||| || | | | || Sbjct 14772 TAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATC 14713 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | |||||| || ||| | ||||| || || || ||| ||||| || |||||||| Sbjct 14712 TTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTC 14653 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||||| ||||||| |||| ||||||||||| ||| || || || |||||||| Sbjct 14652 TTGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGT 14593 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || || ||||| ||||| |||||||| Sbjct 14592 TTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 114 bits (126), Expect = 9e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| ||||| || || || || || ||||| || || |||||| || | | | || Sbjct 13927 TAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATC 13868 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | |||||| || ||| | ||||| || || || ||| ||||| || ||||| || Sbjct 13867 TTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATC 13808 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||||| ||| ||| | || ||||||||||| || || || || |||||||| Sbjct 13807 TTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGT 13748 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| || || || |||||||| Sbjct 13747 TTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || |||||||| || || || ||||| || || ||||||||||| ||| | | |||| Sbjct 14154 AATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCC 14095 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| || ||| | || | | ||||| || |||||||| ||||| || Sbjct 14094 TCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCC 14035 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||| ||| | || ||||||||| ||| || || || || |||||| Sbjct 14034 TGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCACTTCCAAAGTGATGGTT 13975 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || || || ||||| Sbjct 13974 TTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || ||||| || || ||||||||||| ||| | | |||| || Sbjct 14379 ACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCCTCC 14320 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || || | ||||| || || || ||| |||||||| |||||||| | Sbjct 14319 AATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTCTTTGTCTTGA 14260 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || |||| || ||||| ||| || || || || ||||| || Sbjct 14259 ATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAATGTGATGGTCTTT 14200 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || ||||||||| Sbjct 14199 CCGGTGAGTGTCTTGACGAAGATTTGCATA 14170 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || ||||| || || || |||||| ||| | | ||||||| Sbjct 13696 AACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCTTC 13637 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| || ||| | || | | ||||| || ||||| ||||||||||| Sbjct 13636 CAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTG 13577 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||||||| |||| || ||||| ||| || || || || || ||||| Sbjct 13576 TATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCCACTTCCAAAGTGATCGTTTT 13517 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || | ||||| ||||| |||||||| || Sbjct 13516 ACCGGTTAATGTTTTCACAAAGATTTGCATTTT 13484 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| || || || || ||| | | |||| ||||||||| Sbjct 14990 TGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAGAGAGTACGGCCGTCCTCTAATTGT 14931 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | |||| ||| || || || ||||| || ||||| || |||||| Sbjct 14930 TTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCTTTATCTTGAATTTT- 14872 Query 15281 CTCTTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||| || |||| |||||||| ||| || || || || ||||||||||| || Sbjct 14871 CGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACCTCCAATGTGATGGTTTTACCGGT 14812 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || || ||||| Sbjct 14811 GAGAGTCTTGACGAAGATCTGCAT 14788 >seq17817 Length=30685 Score = 107 bits (118), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 |||||||||| || |||||| ||| | | ||||||| |||||||| || || | | Sbjct 813 CTTTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAA 754 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATT 15292 | | | ||||| || ||||| ||||||||||| || || ||| |||||| | Sbjct 753 TGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCT-TTTACATTC 695 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 ||||| ||||| || ||| || ||||| |||||||| || || || | ||||| ||| Sbjct 694 TCTATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACA 635 Query 15353 AAAATTTGCATATTTGAAAATAA 15375 || |||||||| ||| | | ||| Sbjct 634 AAGATTTGCATTTTTAATATTAA 612 >seq68991 Length=328 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| |||||||| || || | |||| ||| ||||| || ||||| ||||||||| Sbjct 17 TCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCTTTG 76 Query 15269 TCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||||| ||| || ||| |||| || |||||| ||| || || || ||||| Sbjct 77 TCCTGTATTTTCGCT-TTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATGTAAT 135 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| || |||||||| || || |||||||| Sbjct 136 GGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 >seq32426 Length=2656 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| ||||| || || || || || ||||| || || |||| | || | | | || Sbjct 448 TAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGACAGTGTACGTCCATC 507 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| | |||||| || | | | ||||| || || || ||| ||||| || |||||||| Sbjct 508 TTCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGGAATACCCTCTTTGTC 567 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| ||||||| |||| ||||||||||| || || || || ||||| | Sbjct 568 CTGTATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGCTCAACTTCCAATGTAATAGC 627 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || || ||||| | || ||| |||| Sbjct 628 TTTACCGGTGAGTGTTTTGAAAAGGATTGGCAT 660 >seq14450 Length=5806 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 |||||||||| || ||||| || ||| | | ||||||| |||||||| || ||| | | Sbjct 5279 CTTTTTGTATATTATAATCACTCAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAAA 5338 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293 | | | ||||| || |||||||| ||||| || || || ||| ||| | | Sbjct 5339 TGAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGTATCTTCGCCTTAACATTCT 5398 Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353 | |||||||| ||| || || || || ||||| || || || | || || || | Sbjct 5399 CAATGGTATCAGACGGTTCCACTTCCAAAGTGATGGTCTTTCCCGTTAATGTCTTAACGA 5458 Query 15354 AAATTTGCATATT 15366 |||||||||| || Sbjct 5459 AAATTTGCATTTT 5471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361559249827509