Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq21107 109 5e-19 seq17817 95.1 1e-14 seq32426 84.2 2e-11 >seq21107 Length=15695 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 ||| || | ||| | || ||||||||||| ||||| ||||| | || ||| | || Sbjct 14772 TAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATC 14713 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || || ||||| || || |||| | || ||||||||| ||| | ||||||||||| Sbjct 14712 TTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTC 14653 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 |||||| ||||| | ||| ||||||| || || ||| | |||||||| Sbjct 14652 TTGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGT 14593 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||||| || | ||||||||||| |||||||| Sbjct 14592 TTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 ||| || | ||| | || ||||||||||||||||| ||||| | || ||| | || Sbjct 13927 TAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATC 13868 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || || ||||| || || |||| | || ||||||||| ||| | |||||||| || Sbjct 13867 TTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATC 13808 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 |||||| || || | | | ||||||| ||||| ||| | |||||||| Sbjct 13807 TTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGT 13748 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || | ||| ||||| || |||||||| Sbjct 13747 TTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||| || |||||||| ||||| | | || |||| |||| ||||| ||| Sbjct 13683 GTCGACTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCC 13624 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || |||||||| |||||| ||| | || |||||||| || ||| ||| Sbjct 13623 GCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCCTTT 13564 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| ||||| || ||| ||| | || || |||||||| ||||| ||| Sbjct 13563 ACATTTTCGATCGTATCCGACGGTTCCACTTCCAAAGTGATCGTTTTACCGGTTAATGTT 13504 Query 19025 TTGACAAAAATTTGCATTTT 19044 || ||||| ||||||||||| Sbjct 13503 TTCACAAAGATTTGCATTTT 13484 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | || || | ||| | || || |||||||||||||| || |||| Sbjct 15014 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAG 14955 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| | ||||| || ||| | || || | |||||||||| || Sbjct 14954 AGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGA 14895 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||||| || ||||||| ||| || | ||| ||||| || ||| Sbjct 14894 ATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACC 14835 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||||||||| || | ||| ||||| || || ||||| Sbjct 14834 TCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 >seq17817 Length=30685 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 18854 TTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATA 18913 ||||| ||||| ||||| | | || |||| |||| ||||| |||||| |||| Sbjct 811 TTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAATG 752 Query 18914 AGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCG 18973 |||||||| |||||| ||| | || |||||||| || ||| |||||| | | Sbjct 751 AGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCTCT 692 Query 18974 ACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAA 19033 | ||||| | || || || | |||||||| || || ||||| ||||| ||||| Sbjct 691 ATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAAAG 632 Query 19034 ATTTGCATTTTAAAT 19048 ||||||||||| ||| Sbjct 631 ATTTGCATTTTTAAT 617 >seq32426 Length=2656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 |||||| | ||| | || ||||||||||||||||| |||| | || ||| | || Sbjct 448 TAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGACAGTGTACGTCCATC 507 Query 18889 CTCCAGCTGTTTACCCGCATAA-ATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGT 18947 || || ||||| |||| | || || | || ||||||||| || | |||||||||| Sbjct 508 TTCGAGTTGTTT-CCCGGAGAAGATCAATCGCTGCTGATCGGGAGGAATACCCTCTTTGT 566 Query 18948 CGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGG 19007 | ||||| ||||| | ||| ||||||| ||||| ||| | ||||| | Sbjct 567 CCTGTATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGCTCAACTTCCAATGTAATAG 626 Query 19008 TTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 |||||| || | ||||||| || ||| ||||| Sbjct 627 CTTTACCGGTGAGTGTTTTGAAAAGGATTGGCATT 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413863166539906