Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq21107 114 9e-21 seq68991 98.7 7e-16 seq32426 96.9 2e-15 >seq21107 Length=15695 Score = 114 bits (126), Expect = 9e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| || || || || || ||| |||||||||||||||||| | | ||| |||| Sbjct 13927 TAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATC 13868 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || | ||||||||| || || ||||| || ||||| || | || | ||| |||||||| Sbjct 13867 TTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATC 13808 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| || || | ||| ||||| |||||| || || | ||||| || Sbjct 13807 TTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGT 13748 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| ||||| | |||||| || || |||||||| Sbjct 13747 TTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || |||||| |||||||| |||||| | | || | || ||| Sbjct 14379 ACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCCTCC 14320 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| |||||||| ||||| || | || | || ||||| ||| | Sbjct 14319 AATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTCTTTGTCTTGA 14260 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || || || | | | |||||| | ||| ||||| || | || || || || Sbjct 14259 ATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAATGTGATGGTCTTT 14200 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | ||||| || || |||||||| Sbjct 14199 CCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || |||||||||||||| || | ||| | || || ||||||||||| ||||| Sbjct 14978 TCCTTTTGAATATTATAGTCCGAGAGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAG 14919 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 |||| || ||||| ||| |||| | || ||||||||| |||||| ||| || | Sbjct 14918 ATCAGACGCTGCTGATCCGGAGGAATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTT 14859 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | || ||||| || | || || ||||||||||| | |||||| || Sbjct 14858 TCGATGGTATCAGAGGGTTCCACCTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACG 14799 Query 44111 AATATTTGCAT 44121 || || ||||| Sbjct 14798 AAGATCTGCAT 14788 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| || || || || || ||| ||||| |||||||||||| | | ||| |||| Sbjct 14772 TAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATC 14713 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || | |||||| || || || ||||| || ||||| || | || | ||| ||||| || Sbjct 14712 TTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTC 14653 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| || || | | | ||||| ||| || || || | ||||| || Sbjct 14652 TTGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGT 14593 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||||| | || || ||||| |||||||| Sbjct 14592 TTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || |||||| ||||||||||||||| | || | || ||| Sbjct 13695 ACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCTTCC 13636 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || || || || | | || || ||| | || | |||||||| || Sbjct 13635 AATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGT 13576 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || || || | | | ||||| | ||| ||||| || | || || |||||| Sbjct 13575 ATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCCACTTCCAAAGTGATCGTTTTA 13516 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| || |||||||| |||||||| Sbjct 13515 CCGGTTAATGTTTTCACAAAGATTTGCAT 13487 >seq68991 Length=328 Score = 98.7 bits (108), Expect = 7e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||||||||| ||||| |||| || || || ||| | || | ||||||| Sbjct 15 CATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCTT 74 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | || ||||| |||||| | | | |||||| | || || || || | |||| Sbjct 75 TGTCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATGTAA 134 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||||||||| | ||| ||||| ||||||||||| Sbjct 135 TGGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 Score = 96.9 bits (106), Expect = 2e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 |||||||||||| || || ||| |||||||| |||||||| | | | ||| |||| Sbjct 187 TAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCACTGAGTGTACGTCCATC 246 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||||||||| || ||||| |||| || || || ||| | || | ||| |||||||| Sbjct 247 TTCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATACCCTCTTTATC 306 Query 44029 TGAAATTTTTTGTTTGAC 44046 | |||||| |||||| Sbjct 307 TTGAATTTTAGCTTTGAC 324 >seq32426 Length=2656 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || ||||||||||| || || | ||| | || |||||||||||||| ||||| Sbjct 243 TCCTTTTGAATATTGTAGTCCGAGAGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAG 302 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 |||| || || || ||| |||| | || ||||||||| |||||| |||||| | Sbjct 303 ATCAGACGCTGTTGATCCGGAGGAATCCCCTCTTTATCTTGAATTTTGGCTTTGACATTC 362 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || |||| || ||||| || | || || ||||| ||| | | || ||||| Sbjct 363 TCAATGGTGTCTGAGGGTTCCACTTCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACG 422 Query 44111 AATATTTGCAT 44121 ||||||||||| Sbjct 423 AATATTTGCAT 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354170319310452