Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq21474 95.1 1e-14 >seq21474 Length=6928 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 12799 ACTTTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACAT 12858 |||| |||| || ||| | | |||| || || || ||||| ||||| ||| | Sbjct 6528 ACTTCAAAAGTCCGCATCCAAAACAAATTTATGCTCTTCTTTATTGGACATTACACCACT 6469 Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||||||||||| ||||| || ||||| || || ||||| || || || ||||| | Sbjct 6468 CTTTTGATATTCGCCGACTCTCTTCTCAAAGAAATTCGTTTTCCCCTCCAATGAAATCTG 6409 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTT 12958 |||||| |||||||||||||| |||| ||| || ||| Sbjct 6408 TTCCATGAAATCGAAAGGATTCGACGAATTATAATACTTT 6369 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 13135 ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTC 13194 ||| ||||| | | ||| || |||||||| || | ||| ||||| | ||| || || Sbjct 5886 ATGTTTAAAGAGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTC 5827 Query 13195 GTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 || || || | ||||||||||| || ||||| || | ||||||||| | || || Sbjct 5826 ATTACTGAAGGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAA 5767 Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 ||||| ||| ||||| || ||||||| ||||||||| Sbjct 5766 TGAACCGCTAAAGAATATACCCTCAACTGATGCAAACGC 5728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430244677863498