Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq17817 187 6e-42 seq21107 165 2e-35 seq14450 136 9e-27 seq32426 127 5e-24 seq21020 104 5e-17 seq21474 96.9 8e-15 >seq17817 Length=30685 Score = 187 bits (206), Expect = 6e-42 Identities = 157/193 (81%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| || |||||||| || || ||||| | |||||||| | |||||| || ||||||| Sbjct 813 CTTTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAA 754 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || ||||||||||| || || || |||||||| ||||| ||||| ||||||||||| | Sbjct 753 TGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCT 694 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 ||| ||||| || ||||| ||||||| |||||| ||||| || || | |||||| |||| Sbjct 693 CTATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAA 634 Query 104550 ATATCTGCATTTT 104562 | || |||||||| Sbjct 633 AGATTTGCATTTT 621 >seq21107 Length=15695 Score = 165 bits (182), Expect = 2e-35 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || | ||| | || || ||||||||||||||||| || Sbjct 13716 ATCCCTCCCCTGAGGCGAAGAACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCG 13657 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | |||||||| | |||||| || || || || || ||||||||||| || Sbjct 13656 GAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGG 13597 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| ||||| || ||||||||||| | ||||| ||||| Sbjct 13596 GGAATCCCTTCTTTGTCCTGTATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCC 13537 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || | || || || ||||| || | |||||| ||||| || ||||||||| Sbjct 13536 ACTTCCAAAGTGATCGTTTTACCGGTTAATGTTTTCACAAAGATTTGCATTTTG 13483 Score = 158 bits (174), Expect = 3e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || |||||||||||||| || ||||| | ||||| |||| ||||||||| Sbjct 14984 GTCGATTCCTTTTGAATATTATAGTCCGAGAGAGTACGGCCGTCCTCTAATTGTTTTCCG 14925 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| ||||| || || |||||||| ||||| || ||||| Sbjct 14924 GCAAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCTTTATCTTGAATTTTCGCTTTC 14865 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | |||||| ||||| ||||| | ||| || || ||||| || || || Sbjct 14864 ACGTTTTCGATGGTATCAGAGGGTTCCACCTCCAATGTGATGGTTTTACCGGTGAGAGTC 14805 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 14804 TTGACGAAGATCTGCAT 14788 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| ||| | || || |||||||||||||| || || ||||| | ||||| || Sbjct 14152 TACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCCTC 14093 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | ||||||||| || ||||| || ||||||||||| || || ||||| ||||||||||| Sbjct 14092 CAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTG 14033 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||||| || || ||||| || | ||||||| ||||| || || | || || || || Sbjct 14032 AATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCACTTCCAAAGTGATGGTTTT 13973 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || |||||||| Sbjct 13972 GCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || |||||||| || || || || | || ||||| |||||||| || Sbjct 14756 GTCGACTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTCCCG 14697 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | ||| ||||| || || || || ||||| || ||||| || || ||| Sbjct 14696 GCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTCTTGAATTTTGGCCTTT 14637 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||||||| ||||| || || | |||||| || ||||| || |||||| Sbjct 14636 ACATTTTCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGTTTTACCGGTGAGTGTT 14577 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 14576 TTGACAAAGATTTGCAT 14560 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||| | || | ||||| | ||| | || || |||||||||||||| || || Sbjct 14400 ATCCCCCCGCGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCG 14341 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| | ||||| || | |||||| || |||||||| | || ||| ||||| || Sbjct 14340 CTGAGAGTCCGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGG 14281 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| ||||| || |||||||| || || || ||||| | ||||| ||||| Sbjct 14280 GGAATTCCCTCTTTGTCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCC 14221 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||| || ||||| || || ||||| || || || || ||||| Sbjct 14220 ACCTCCAATGTGATGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||||||||| || || || || | || ||||| ||||||||||| Sbjct 13911 GTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTTCCG 13852 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | ||| ||||| || || || || |||||||| ||||| || || || Sbjct 13851 GCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATCTTGAATTTTGGCCTTA 13792 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||||||| || || || || | |||||| || || || || || || Sbjct 13791 ACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTTTTGCCGGTGAGAGTC 13732 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 13731 TTGACGAAGATTTGCAT 13715 >seq14450 Length=5806 Score = 136 bits (150), Expect = 9e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| || |||||||| ||| ||||| | |||||||| | |||||| || || |||| Sbjct 5279 CTTTTTGTATATTATAATCACTCAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAAA 5338 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || ||||||||||| || || ||||| ||||||||||| ||||| || || ||||| | Sbjct 5339 TGAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGTATCTTCGCCTTAACATTCT 5398 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | |||||| ||||| || || | || || ||||| || || | ||| || || | Sbjct 5399 CAATGGTATCAGACGGTTCCACTTCCAAAGTGATGGTCTTTCCCGTTAATGTCTTAACGA 5458 Query 104550 ATATCTGCATTTT 104562 | || |||||||| Sbjct 5459 AAATTTGCATTTT 5471 >seq32426 Length=2656 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||||||||| | || || || | || ||||| |||||||| || Sbjct 464 GTCGACTCCTTTTGAATATTATAATTGGACAGTGTACGTCCATCTTCGAGTTGTTTCCCG 523 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 | || || | | ||| ||||| ||||| || || ||||| ||||| || || || ||| Sbjct 524 GAGAAGATCAATCGCTGCTGATCGGGAGGAATACCCTCTTTGTCCTGTATTTTGGCCTTT 583 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||||||| || || || || | |||||||| ||||| || |||||| Sbjct 584 ACATTTTCGATGGTATCGCTCGGCTCAACTTCCAATGTAATAGCTTTACCGGTGAGTGTT 643 Query 104543 TTTACAAATATCTGCATT 104560 || | || || ||||| Sbjct 644 TTGAAAAGGATTGGCATT 661 >seq21020 Length=2817 Score = 104 bits (114), Expect = 5e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| ||| | || || | ||||||||||||||| || || ||||| | | || || Sbjct 2622 TACTAAATGGAGAGTCGACTTTTTCTGAATATTATAATCGGAAAGAGTCCATCTGTTCTC 2681 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | ||||| ||| | || | || |||||||||| || || || |||||||| ||||| Sbjct 2682 CAATTGTTCCCCATCGAAGGTGAGTTTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTG 2741 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| || ||||||||| | | ||||| ||| | || || | || || || || Sbjct 2742 TATCTTCGCCTTTACATTTCCGATCGTATCCGACGGTACAACTTCCAAAGTGATCGTTTT 2801 Query 104530 ACCAGTAAGTGTTTT 104544 ||| || | |||||| Sbjct 2802 ACCGGTTAATGTTTT 2816 >seq21474 Length=6928 Score = 96.9 bits (106), Expect = 8e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 269129 GAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCT 269188 ||| | |||||||| ||||| | || || |||||||||||| || || || ||| | Sbjct 5716 GAACGTTTAGTTGCGTTTGCATCAGTTGAGGGTATATTCTTTAGCGGTTCATTCGCCTCA 5775 Query 269189 ATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATA 269248 || |||||| | |||||| | || |||||||| ||||| || ||| ||| ||| ||||| Sbjct 5776 ATATTTTGGCTAAAGAAACGTGGACTTATGCCGGGATTGACCTTCAGTAATGAACTGATA 5835 Query 269249 AGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTA 269294 | || || || | || || || ||||| |||||| | |||| Sbjct 5836 TCACGTGATGAGGGACTTCATTGTGATTTCGCGTGTTTACTCTTTA 5881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149326455340892