Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq11798 82.4 9e-11 >seq11798 Length=7942 Score = 82.4 bits (90), Expect = 9e-11 Identities = 205/309 (66%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 164794 GTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853 || |||||||| | | ||||||| ||||| || ||||| |||||||| || ||| | Sbjct 1875 GTCGTTAATCAACTTTTAGCTAAAATCGATGGCGTCGAATCGTTAAATAACATATTAGTA 1934 Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCT-TTATTACGACCTGGTCGATT 164912 | || ||||| || |||| ||| | |||||||| || || ||| |||| || || | Sbjct 1935 ATTGGAATGACAAATCGACGCGATATGATTGATGAGGCACTTCTTA-GACCCGGAAGAAT 1993 Query 164913 AGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGT 164972 || || |||| || || | |||||| || || || | | || || | || | Sbjct 1994 GGAGGTGCAAATGGAGATCAGTTTACCCAACGAATTTGGGAGGGTACAGATACTTAATAT 2053 Query 164973 TCATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAAT 165032 ||| || |||||||| | | | | |||| | ||||| || | ||| || | Sbjct 2054 TCACACCGCACAAATGAAAAAATATAAAAAATTAAGTAATGATGTGAATATTAATGAATT 2113 Query 165033 AGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCTCA 165092 || | |||| ||||||| || ||||| | ||||| | || | ||||| || Sbjct 2114 GGCGGGGAAAACAAAAAATTTCTCAGGCGCTGAGATTGAGGGTCTCGTGCGGGCCGCACA 2173 Query 165093 ATCAACCGC 165101 ||||||||| Sbjct 2174 ATCAACCGC 2182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594825879668400