Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq11707 89.7 3e-13 >seq11707 Length=12102 Score = 89.7 bits (98), Expect = 3e-13 Identities = 83/104 (80%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||| ||| | |||| || ||| ||| ||||||| || |||||||||| |||| | Sbjct 11503 AAAAATAAATTTAA-AATAAAGAAAAGTTTGGCCCGTGTGGGGATCGAACCCACGACTTC 11561 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||| |||||| |||||||||||||| ||||| Sbjct 11562 CGCGTTATTAGCACGGCGCTCTAACCAACTGAGCTAACAGGCCG 11605 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| || |||||||||| |||| | ||||||||||||||| |||||| |||||| Sbjct 5217 TGGCCCGTGTGGGGATCGAACCCACGACTTCCGCGTTATTAGCACGGCGCTCTAACCAAC 5158 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 5157 TGAGCTAACAGGCC 5144 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261043599711124