Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq21107 122 8e-23 seq68991 102 7e-17 seq32426 98.7 9e-16 >seq21107 Length=15695 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || ||||| || | ||| | ||| ||||||||||| | ||||| || Sbjct 15014 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAG 14955 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||||| | ||||||||| ||||||| | | |||||||| |||||| Sbjct 14954 AGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGA 14895 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || ||||| || | |||||| || || ||| ||| || |||| | | || || Sbjct 14894 ATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACC 14835 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||||| || || ||||| || || ||||||||||| Sbjct 14834 TCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| || | ||||| || || || | ||| || || || || | || | Sbjct 14177 TTTGCATACCTCCCCTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGT 14118 Query 94833 AATCGCTCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 ||||||| | ||| || | ||||||| |||||||| | || || | ||| || || Sbjct 14117 AATCGCTGAGAGTCCGTCCG--TCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTG 14060 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| || ||||| || ||||| || | ||| || ||||| || | | || || | Sbjct 14059 ATCCGGGGGAATTCCCTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGA 14000 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||||||||| || || ||||| || || ||||||||||| Sbjct 13999 GGGTTCCACTTCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/237 (68%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| || | || | ||||| || | ||| || || || || | |||| Sbjct 13721 TTTGCATCCCTCCCCTGAGGCGAAGAACCAAATGGAGAGTCGACTCTTTCTGAATATTAT 13662 Query 94833 AATCGCTCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 ||||| | ||| || | || |||| ||||| || | ||||| | ||| || || Sbjct 13661 AATCGGAAAGAGTCCGTCCG--TCTTCCAATTGTTTCCCCGCGAAGATGAGTCTCTGTTG 13604 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| || ||||| ||||||||||| | || || ||||| || ||| || || | Sbjct 13603 ATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCCTTTACATTTTCGATCGTATCCGA 13544 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||| ||||| || || | |||||||||||||| ||||| Sbjct 13543 CGGTTCCACTTCCAAAGTGATCGTTTTACCGGTTAATGTTTTCACAAAGATTTGCAT 13487 >seq68991 Length=328 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||||||||| ||||||| | | || ||||| || ||||| |||||||| Sbjct 16 ATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCTTT 75 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| || ||||| ||| ||| || | | | ||||| || | || || Sbjct 76 GTCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATGTAAT 135 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || || ||||||||||| || || ||||| Sbjct 136 GGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 >seq32426 Length=2656 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || ||||| || | ||| | ||| ||||||||||| | || || || Sbjct 207 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAG 266 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||||||| ||||||||| ||||||| | | || ||||| |||||| Sbjct 267 AGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGA 326 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || ||||| || | |||||| || ||||| | | ||||| | | | || || Sbjct 327 ATCCCCTCTTTATCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCACT 386 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| ||||| || | || |||||||| || || ||||| Sbjct 387 TCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 || ||||| ||||| | ||| || |||||||| | ||||||| | || |||| | Sbjct 446 CGTAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGACA--GTGTACGTC 503 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| || || ||||| ||| ||||| |||| |||||||| ||||||||||| |||| Sbjct 504 CATCTTCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGGAATACCCTCTT 563 Query 94911 TGTCATAAATTTTTGCCTTGAC 94932 |||| | ||||| ||||| || Sbjct 564 TGTCCTGTATTTTGGCCTTTAC 585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447504174365640