Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq75808 129 9e-26 >seq75808 Length=8707 Score = 129 bits (142), Expect = 9e-26 Identities = 192/270 (71%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||| | | || || |||||||| || |||||||| || || || || Sbjct 749 CGCAAAACGCCATCGGAAAGTGCTCCGCGATAACATTCAGGGAATCACGAAACCCGCGAT 808 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||| |||| |||||||| || || || ||| | || || | | |||||||| | Sbjct 809 CAGACGTTTGGCACGTCGTGGCGGTGTAAAACGTATTTCCGGTCTCATTTATGAAGAAAC 868 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 |||| |||||||| | || | ||| ||| || | ||||| || || || || | Sbjct 869 ACGTGGGGTTTTGAAAGTGTTTTTGGAGAACGTAATTCGGGATGCCGTTACA-TACACAG 927 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||||||||| || ||| | ||||| | |||||||| | |||||||| | Sbjct 928 AGCACGCCAAACGTAAGACGGTGACCGCTATGGACGTTGTCTATGCTCTCAAACGTCAGG 987 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | | || ||||| || |||||| Sbjct 988 GAAGAACTCTCTACGGTTTCGGGGGTTAAT 1017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78946786496157