Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq3903 91.5 3e-14 seq6272 86.0 1e-12 seq16730 82.4 1e-11 >seq3903 Length=6546 Score = 91.5 bits (100), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 4576 TGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTC 4635 ||||| ||| |||| || ||||| ||||| | || |||||| |||| | ||| || Sbjct 3890 TGGCTTAAAACATACATAGATAAGAATACTGAATTAAGAAAACAAGCTGATTCTGATTTT 3949 Query 4636 GaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATG-T 4694 |||||| | || | ||| |||||||||||||| |||| |||||| || || || |||| | Sbjct 3950 GAAAAAGATTTCTTTAAGTTAATGAATAATGCTGTTTATGGAAAAACAATTGAAAATGTT 4009 Query 4695 ACGAAAA 4701 | ||||| Sbjct 4010 ATGAAAA 4016 >seq6272 Length=2111 Score = 86.0 bits (94), Expect = 1e-12 Identities = 163/239 (68%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 4474 AAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTT 4533 ||||| ||||| || | | ||||||| ||| |||||| ||||| |||||| || Sbjct 1241 AAAAAGAATTA-GTATGTGATTATAAAACTTTAAAACAAGCATTAGAACATGGTTTAATT 1299 Query 4534 CTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATC 4593 | ||||||||||| || | |||| ||| ||| | ||| | ||| | ||| | Sbjct 1300 TTAAAGAAAATACATTGTGTTATCAAATATGAACAAAAATCTTGGTTGAAACCTTATTTT 1359 Query 4594 GATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAA 4653 || |||||| | || || | ||| ||| || |||||| |||| | |||| Sbjct 1360 GAGTTAAATACTAAACTTAGACAAGAAAGTAAATTTGATTTAGAAAAAGACTTCTTTAAA 1419 Query 4654 TTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAAAGATAT 4712 ||||||||||||| ||| |||||| || || || |||||| |||| ||||||| Sbjct 1420 TTAATGAATAATGTTATTTATGGAAAAACTATTGAAAATGTATTAAAAAGACAAGATAT 1478 >seq16730 Length=13709 Score = 82.4 bits (90), Expect = 1e-11 Identities = 169/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 4471 GATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTA 4530 |||||||| || ||| | | |||| || ||| |||||| |||| || ||| Sbjct 6460 GATAAAAAAGGTTTAGTTTGTGATTATAGAACTTTAAAACAAGCACTAGAACATGGATTA 6401 Query 4531 GTTCTTAAGAAAATACACCTAGT-CT-TGAAATTTGAGCAATCAGACTGGCTCAAATCAT 4588 || | ||||||||||| | || || | |||| ||| ||| || ||| | ||| ||| Sbjct 6400 ATTTTAAAGAAAATACA--TTGTGCTATTAAATATGAACAAAAAGCTTGGTTAAAACCAT 6343 Query 4589 ATATCGATAAAAATACCGCATGCCGA-AAACTAGCTAAGAATGAGTTCGaaaaaaaCTTT 4647 |||| || || ||||| | || || ||| || || | || || |||| | | || Sbjct 6342 ATATTGAAAAGAATACAGAATTAAGACAAAAAAGTGAATCA-GAATTAGAAACAGATTTC 6284 Query 4648 TATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAAA 4707 | |||||||||||||||||| ||| |||||| || || || ||||| |||| || Sbjct 6283 TTTAAATTAATGAATAATGCTATTTATGGAAAAACTATTGAAAATGTTTTAAAAAGACAA 6224 Query 4708 GATAT 4712 ||||| Sbjct 6223 GATAT 6219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97810995172746