Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq5884 98.7 2e-15 >seq5884 Length=32987 Score = 98.7 bits (108), Expect = 2e-15 Identities = 229/334 (69%), Gaps = 16/334 (5%) Strand=Plus/Minus Query 193870 CTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATG 193929 |||| ||||| ||||| | ||||| |||||||| | | ||||||||||| | ||| Sbjct 22633 CTTA-GGTGTTGCAAAACTCTATGGATATTGGATTGTGATAAATTATCGTGAAGCGTATA 22575 Query 193930 GATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACAT 193989 | ||| |||||| | || ||||||||||| || | | |||| |||| Sbjct 22574 ACATGTTTGCTGTGAATGGTATATTATTTAATCACGAATCACCGCGTCGCGGTGCAACAT 22515 Query 193990 TTGTAACTCGTAAGATTACACAAGGTT---TATCTAAGATC--TCTGT-TGGATTACAGA 194043 |||| || ||||| ||||| | ||| | | || || |||| || ||| || Sbjct 22514 TTGTTACCCGTAAAATTACCC---GTTCCGTCGCCAAAATACATCTGAATGAATTGGAGT 22458 Query 194044 AGATTCTTTATCTTGGTAATCTTAATGCTAAGA-GGGATTGGGGACACGCAAAGGATTAT 194102 | ||| | || || ||||| | | | || |||| ||||| || || ||||||||| Sbjct 22457 AT-TTCG--AACTCGGAAATCTCGACTC-ACGACGGGACTGGGGTCATGCGAAGGATTAT 22402 Query 194103 GTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACA 194162 ||||| ||||||||| |||| | |||||||| || || | |||||||| ||| | || Sbjct 22401 GTTGAGGCGATGTGGAAAATGCTACAACAGGACGATCCTCAGGATTATGTCATTTCAACC 22342 Query 194163 GGTGAACAGTATTCTGTTAGAGACTTTG-TGAAT 194195 || ||| |||||||| | || || | ||||| Sbjct 22341 GGAGAATCACATTCTGTTCGGGAATTCGTTGAAT 22308 Score = 98.7 bits (108), Expect = 2e-15 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 193646 TGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTA 193705 ||| ||||||||| | | || ||||||||||||||||| || ||||| || || || Sbjct 22909 TGAAATCTATAATTTGGCAGCACAAAGTCATGTTAAAGTGTCATTTGATCTGAGTGAATA 22850 Query 193706 TACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGG 193765 || | ||||| ||||| | || ||||| |||||| | | || |||| | || Sbjct 22849 CACAACAAATGTCGATGCACTCGGGACTCTCAGAATATTAAATGCCATTCGAACCGCCGG 22790 Query 193766 AATGGAGAAAGATGTT-CGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTC 193824 | | ||||| | ||| | || ||||||||||| || || || ||||||| || | Sbjct 22789 ACTCGAGAATAAAGTTAAGTAT-TATCAGGCATCAACGAGTGAGTTGTATGGGAAAGTAC 22731 Query 193825 TAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGT 193877 | | ||| | | |||||| ||||| ||| |||| || || ||||||||| Sbjct 22730 AGGAAATTCCCCAAACAGAAAAGACACCGTTTTATCCGCGTTCACCTTATGGT 22678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806137445996440