Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq21474 113 5e-20 >seq21474 Length=6928 Score = 113 bits (124), Expect = 5e-20 Identities = 239/350 (68%), Gaps = 10/350 (3%) Strand=Plus/Minus Query 21286 ACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACA-CATTAATT 21344 ||| |||| ||| | ||| | ||| || ||| |||| || ||| ||| ||| | | Sbjct 6060 ACAGCCCAATTCAATGAGTAAACGATCAGCGACATATTCAATGTAT-GACTTCATCAGTA 6002 Query 21345 CACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAG 21404 |||| ||||||||||| | | || ||||| || | |||||||| | ||| || | Sbjct 6001 CACAGTTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGG 5942 Query 21405 AGACGGCTTCAACAATTATATTTATTATCCTAGATGTAC--TAGGGGGAT--ACAATAAT 21460 || |||||| || ||| | || | | | || | || || || ||| Sbjct 5941 TCACAGCTTCAGTAACAATACGAGTGAT--TTGTTCGACCGTTGGTTTATTAACGATA-- 5886 Query 21461 TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCA 21520 |||||||| | ||||| || ||||||||||| | || ||||| | ||| | |||| Sbjct 5885 TGTTTAAAGAGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTCA 5826 Query 21521 TTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAAT 21580 ||| || || || || ||||| | ||| | || |||| |||||||||||| || ||| Sbjct 5825 TTACTGAAGGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAAT 5766 Query 21581 GCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 | || |||||| || |||||||| | ||||| |||||||| ||||| Sbjct 5765 GAACCGCTAAAGAATATACCCTCAACTGATGCAAACGCAACTAAACGTTC 5716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530966988306760