Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8365 628 3e-175 seq21474 140 4e-28 >seq8365 Length=5311 Score = 628 bits (696), Expect = 3e-175 Identities = 1530/2293 (67%), Gaps = 56/2293 (2%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||||||||| | | | |||||||||||||| | ||||||||| ||||| |||| Sbjct 618 GTGAATTGAATAGCATTTGCCGCGGGTTTCGTACGCAAATAGTACATCCCCGTCTTTAAC 677 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAG-TTTGGAATAACTCGGATCTGCTAT 62113 || | |||| |||| ||| ||||| || | |||| || | || |||| || Sbjct 678 CCCAATTTCCAGCCGTGAAAGTGCATCGATGTGATCTTTGCCATTG-TGGGTGCTGCGAT 736 Query 62114 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62173 ||| || || | ||||| ||||| || ||||| || || | || |||| ||||| || Sbjct 737 ATGAATGTTAAGCGATTGGCTTTGGTCAATGAAAGCCCCGCGATCGGCAGACATTTCAAT 796 Query 62174 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62233 | || |||| |||||||| | ||||| || | | ||| | ||| | |||| Sbjct 797 AACTGTACGCTGTGATATTTCCCATACTGTTTTGTACAGTTCCTTCAAATCCTGGGGAAT 856 Query 62234 GTTTGTATTC---TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62290 | || ||||| ||||| || | || || |||||| | | |||||| Sbjct 857 TCCCTCAATCAATTGAATCGATCCGTGATTAGAAATTATTTCATTCTTAAGATTATCATT 916 Query 62291 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62350 ||| | || | || || ||| |||| | ||||| ||||||| | |||||||||||| Sbjct 917 CCAAAGTTCACGTTCAGTCAAATCTCTCAAAAGATGATGATTAACGATTTGAAATTCTCC 976 Query 62351 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62410 ||||| ||||| || | || |||||||| ||||||| ||| || ||||| |||||||| Sbjct 977 GGACAAAACTCTTCGTGAATATATATTACTCGTATACGCTTCAACAGACTCGTTATTTCC 1036 Query 62411 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470 |||||| || || || ||||| |||||||| ||||| | ||| | ||| || || || || Sbjct 1037 CAAAATCTGTGCTGTCGATGCCGTCGGCATCGGTGCTAACAACAGACTGTTCCTGAGTCC 1096 Query 62471 GTATGTTCTGATTTTATCTTTTAGAGGTTC---CCAATTCCAAAGATCCGACGGTACAAC 62527 || || |||| || || || || ||| ||||||||| || || | |||| Sbjct 1097 GTGCATTTTGATCTTTTCCTTCAG---TTCAGTCCAATTCCATAGGTCTGTCGGTGTCTT 1153 Query 62528 NNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTA 62587 || || || || ||| |||| || || |||||| ||||| Sbjct 1154 ATTCCACATGTCATACTGCAGTATCCCTTTAGAGGCGGGAGAACCCTCATATGACTCGTA 1213 Query 62588 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62647 || || | || | || | ||||||||||| || | || ||| |||| | || || Sbjct 1214 AGGACCATACTGTTGTGCCAATTCACAACTCGATTCGAGAGCCCCGAAATATAATGTCTC 1273 Query 62648 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 62707 || || | |||| ||| || ||||| | || ||||| || ||| | |||||| Sbjct 1274 AAATATTTGAATATTGAGACGTTTCGCTTCGGGACTCTCAAACGGGTAACGCATGAGAAT 1333 Query 62708 AAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62767 ||||| || |||||||| ||||| ||||| || || || | | || ||||| ||| Sbjct 1334 GAACGCATCGGCTAATCCCTGAACTCCAATGCCAATCGGACGGTTCCTTTTATTGGAGCG 1393 Query 62768 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 62827 ||| | ||| |||| ||||||||||||||||| ||||| ||||| | |||| | ||| Sbjct 1394 TTCCGTTTCAGGAACGGGATAATAATTAATATCGATAATCTTATTTAAGTTTCGGGTAAT 1453 Query 62828 TACTTTGACCACATCCTTCAG-TTTGAGAAAATCAAATCGCCCATCTATT-------ACA 62879 ||||| | |||||||| || |||| ||| ||||| | | | || || Sbjct 1454 GACTTTAGCGACATCCTTGAGCTTTGCGAAG-TCAAAG-GTGCGGGTTTTGGTGTCGACG 1511 Query 62880 AACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATAT 62939 ||| || | || || || |||| |||||| ||||| | || | | | | |||| Sbjct 1512 AACCGATTGAGTGCGACTGAAGCCAAATTACACACGGCAATTTCGTCGGGAGATGAATAT 1571 Query 62940 TGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTC 62999 | | || |||||||| ||||| || || || ||||| | |||||||||||| | Sbjct 1572 TCAACGATTTCAGTGCATAGATTTGAGCATTTAATGGTTCCGAGATTTTGTTGATTGGAC 1631 Query 63000 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 63059 ||| ||| || || ||||||| ||| | || || || || || ||||||| || Sbjct 1632 TTTCGGTTGCAATGGTCTTTATAAACCATGTACGGTGTGCCCGTCTCGATCTGAGCCTCG 1691 Query 63060 ATAATCGCTTTCCAGAC-GACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTC 63118 | ||| || | ||| | |||| ||||| | | ||||||| || |||||||||| Sbjct 1692 ACAATGGCATACCACAATGACT-GAGCCCGAACCTGACGTTTGTATTTCTTTTCTCTTTC 1750 Query 63119 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 63178 |||| ||| || || ||| | | ||||| | | || || || ||||| Sbjct 1751 GTATTTCTCATATAAATCCTCAAACGCCTGACCCCACGTGTCATGTAAACCCGGGCATTC 1810 Query 63179 ATCCGGACACATCAACGACCACTCTCCGTCATCC--TTCA-CTCGTTTCATAAAGAGATC 63235 | ||||||||||| ||||| | ||| |||| |||| | |||||||| || | ||| Sbjct 1811 GTGTGGACACATCAATGACCA-TATCC--CATCGGATTCAACACGTTTCATGAACAAATC 1867 Query 63236 AGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTC-TATGTTCCTCGTTTCCTGTATTC 63293 ||||||||||| || ||| || | || | | | ||| |||||| || || ||| Sbjct 1868 GGGAATCCAAAG-GCCATAGAACAAGTCACGTGCACGTAT-TTCCTCAGAACCCGTGTTC 1925 Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353 || |||| |||||||| | | | ||| | |||||||||||| | ||| | || | | Sbjct 1926 TTCCTAAGGTCGAGGAATTCGAATACATCGGCATGCCACGGTTCGATGTAAACTGCGAAA 1985 Query 63354 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63413 | || || |||||||| || |||||||| | ||||| || || || || | || | | Sbjct 1986 GCGCCGGGACGTTTGTTCCCCCCCTGATCGACGTATCGGGCAGTATTGTTGAACACGCGC 2045 Query 63414 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473 ||||| || | | || |||||||| ||||| ||||| | ||||| | || | || Sbjct 2046 AACATCGGGACCAATCCATTTGATATGCCATTCGTACCCGCAATATAAGTGCCCTTAGCC 2105 Query 63474 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533 | || | || || || || || || || ||| || || | |||||| || Sbjct 2106 CTTATGCAATGAACATTTATTCCGATACCACCGGCAGCTTTCGATATGACAGCGCATTGT 2165 Query 63534 TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 || | ||||| || || ||||| || || ||||| ||||| | | || ||||| || Sbjct 2166 TTGAGTGTGTCGTAAATCCCCTCAATACTGTCATCTTTCATGGTCAATAAGAAACAACTG 2225 Query 63594 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63653 |||| ||| | | |||||| ||||| || | || || || || || ||||||||| Sbjct 2226 GACAATTGTGGGTGCGGAGTTCCGGCATTGAACAGTGTCGGTGATGCATGAGTAAACCAT 2285 Query 63654 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCT 63713 ||| || | ||||| ||||||||||| || | ||| || || | || || || Sbjct 2286 CGTTCGGACATGAGATTATACGTCTCAATGGCAGCGTCAATGTCATTTCCGTGTATCCCC 2345 Query 63714 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63773 || ||||||||||| | ||||||||| |||| ||| ||| || | || || || | Sbjct 2346 ACAGCGACACGCATGAGCATGTGCTGCGGTCGTTCCGCGACTTTCCTATTGATCTTAATT 2405 Query 63774 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT-ATGAAAAGTCTCGTTCGTA 63832 || || || || | ||||| ||||| ||||| |||| |||| || || || || || Sbjct 2406 AAATATGACCGCTCAAGTGTTTTGAAACCGAAATAATTGTAATGATAA-TCGCGATCATA 2464 Query 63833 AATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT--- 63889 ||| || | || |||||| || || || | || | ||| || | || Sbjct 2465 AATGATGGCGGAATTGAGTCGTTCGGCATTCTTTTCAATGA----CATCGTAAATCTCAT 2520 Query 63890 -TGAAATAATCGGAGAATGTTT----CCCATT-TTTAGGATTAACATAGTTGA-ATAAAT 63942 |||||| ||||| ||||| ||||| | | || |||| ||| | | || Sbjct 2521 CTGAAATCATCGG----TGTTTTGAGACCATTACTCTCGTTTCTCATA--TGATAGAGAT 2574 Query 63943 CCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTC 64002 || || || || ||| ||| |||||||| || |||| |||||| || || || | Sbjct 2575 CCCTAATGACATCGGAAAAGTTTTTCTTTGTTTCTTTATGTAAATTTGACACTGCAATAC 2634 Query 64003 TGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTG 64062 || || ||||| |||||||| | ||||| || || || || || ||||| || | Sbjct 2635 GTGCCGCGAGAATAGCATAATCGGCATGTTTCGTTGTCATTGTTGCGGCGATTTCCGCCG 2694 Query 64063 CCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAG 64122 | | | | |||||||| || || || || || |||||| || || ||||||| | Sbjct 2695 CTAAATTATCCAATTCAACGGTCGTGACACCCGAATATATCCCGGCGATGACCTTCAATG 2754 Query 64123 CTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACGAG 64182 ||| | ||| || | || | ||| || ||||| || | ||| || || | Sbjct 2755 TGATTGACGGTGCATCGATGTAATTCATGTCCAAACCATAGCAGAGTTTCACGATTCGGG 2814 Query 64183 ACGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTT 64242 | |||||||| || ||||| || ||| || ||| | || |||||| ||| |||||| Sbjct 2815 ATGTGATTTTGTCGAACATAACTGATTCTTTTCGTCCGTCTCTTTTAATTACATACATTT 2874 Query 64243 TTGTTGGTGTAAT 64255 ||| |||| ||| Sbjct 2875 TTG-CGGTGCAAT 2886 >seq21474 Length=6928 Score = 140 bits (154), Expect = 4e-28 Identities = 232/334 (69%), Gaps = 6/334 (2%) Strand=Plus/Minus Query 33118 CCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33177 ||||||||| | || | ||| ||||| |||| || |||| ||||||| | |||| Sbjct 6056 CCCAATTCAATGAGTAAACGATCAGCGACATATTCAATGTATGACTTCATCAGTACACAG 5997 Query 33178 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 33237 ||||| || || ||| || ||||| || | || | ||| || |||||||||| || Sbjct 5996 TTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACA 5937 Query 33238 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGG---ATGCAATAAATGTTTA 33294 || || || | |||| | | | ||| ||| || ||| || | | ||||||| Sbjct 5936 GCTTCAGTAACAATA---CGAGTGATTTGTTCGACCGTTGGTTTATTAACGATATGTTTA 5880 Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 || | ||||| |||||||| || || || ||||| || | || ||||| || Sbjct 5879 AAGAGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTCATTACTG 5820 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || | ||| ||||| || ||||| || || ||||||||||| || |||||||| || Sbjct 5819 AAGGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCG 5760 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33448 |||||| || || || |||| ||||| |||| Sbjct 5759 CTAAAGAATATACCCTCAACTGATGCAAACGCAA 5726 Score = 123 bits (136), Expect = 3e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 33688 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33747 ||||| ||||| || ||||||||||| || || ||||||||||| |||||| ||||||| Sbjct 4576 AAATTCTCATTAACGATTCCGTCACTCGCAGCGAAAAACGCCAAAACATGTGATATAAAA 4517 Query 33748 TATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTC 33806 | ||| | || || ||| | | |||||| | ||||| | | ||| ||||| Sbjct 4516 TGACGTTCAT-TGTCATTGAGTCTGTGCCAATCGGTCATATCCCGACTCAAATCCACTTC 4458 Query 33807 TTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTG 33866 ||| || |||||||| ||||||||||| || |||||||| |||| || || | ||| | Sbjct 4457 TTCGACAGTCCAAAACGATGCCTCTGCTTTCTTATACATCATCCAAATATCGTGATACTC 4398 Query 33867 GATTGGGAAAATAACAAATC 33886 || ||||| || || |||| Sbjct 4397 AATCGGGAACATTACGAATC 4378 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 33570 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33629 || ||| || || ||||| |||||||||||||||||||| || || ||||| || || || Sbjct 5241 AATATACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAATTGCAATTTG 5182 Query 33630 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCC 33687 ||| ||||| || |||| || || |||| || ||||| | |||||||||||| Sbjct 5181 AAACCCGTAAAAGCATCGCGCTTCAGTAACTTGAACTTCACGAACGAATCGTTCCGCC 5124 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 32956 CTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATT 33012 ||| ||||||| |||| ||| ||| | || ||||||| | ||||| || || | Sbjct 6527 CTTCAAAAGTCCGCATCCAAAACAAATTTATGCTCTTCTTTATTGGACATTACACCACTC 6468 Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 ||||| ||||| || || | || || || ||||| ||||| || |||||||| || | | Sbjct 6467 TTTTGATATTCGCCGACTCTCTTCTCAAAGAAATTCGTTTTCCCCTCCAATGAAATCTGT 6408 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAA 33105 ||||||||||| || ||||| | ||||||| Sbjct 6407 TCCATGAAATCGAAAGGATTCGACGAATTATAA 6375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621853546108840