Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq8365 131 2e-25 seq21107 125 7e-24 seq17817 96.9 3e-15 >seq8365 Length=5311 Score = 131 bits (144), Expect = 2e-25 Identities = 317/466 (68%), Gaps = 28/466 (6%) Strand=Plus/Plus Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173 || ||||||||||| | ||||| |||||||| || | |||||||||||| ||||| ||| Sbjct 615 ACAGTGAATTGAATAGCATTTGCCGCGGGTTTCGTACGCAAATAGTACATCCCCGTCTTT 674 Query 147174 AAACCCTTTTCCCAAGAATAGTCGTGAA--TGGAT-GATAAAA-CTTT---ATAGGTTGG 147226 || ||| || ||| | |||||| || || ||| | |||| || | | || Sbjct 675 AACCCCAATTTCCA------GCCGTGAAAGTGCATCGATGTGATCTTTGCCATTG-TGGG 727 Query 147227 ATTGGCCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGC 147286 || | | || || ||||||||||| || || ||| ||| || || || || | Sbjct 728 TGCTGCGATATGAATGTTAAGCGATTGGCTTTGGTCAATGAAAGCCCCGCGATCGGCAGA 787 Query 147287 CATGTCCAACACT--ACTTTTTGTTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATA 147344 ||| || | ||| || | || | |||||||| | || ||| | || |||| | | Sbjct 788 CATTTCAATAACTGTACGCTGTGAT--ATTTCCCATACTGTTTTGTACAGTTCCTTCAAA 845 Query 147345 TTGTGTGGAATTTCATCAATATTTTGTACAGATCCGTTGTTTTTAATAATTT--TTATCA 147402 | || |||||| | ||||| ||| | ||||||| || ||| |||| || | | Sbjct 846 TCCTGGGGAATTCCCTCAATCAATTGAATCGATCCGTGATTAGAAATTATTTCATTCTTA 905 Query 147403 TGAT-ATCTGTCGAATAT--ACGTTGGTGTCTACGAGTTTATCGACGAGATGCTGATTGA 147459 ||| ||| || || | ||||| ||| | | | || | ||||| ||||| | Sbjct 906 AGATTATCATTCCAAAGTTCACGTTCA-GTCAAA---TCTCTCAAA-AGATGATGATTAA 960 Query 147460 CCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGA 147519 | | |||| | || || |||| |||||||||| || | |||||| ||| ||| || | Sbjct 961 CGATTTGAAATTCTCCGGACAAAACTCTTCGTGAATATATATTACTCGTATACGCTTCAA 1020 Query 147520 ACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCAT 147565 |||||||| || || | ||||||||| |||| |||||||||||| Sbjct 1021 CAGACTCGTTATTTCCCAAAATCTGTGCTGTCGATGCCGTCGGCAT 1066 >seq21107 Length=15695 Score = 125 bits (138), Expect = 7e-24 Identities = 176/247 (71%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 26749 GTACTTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCA 26808 ||| ||||||| |||| |||||| | ||||| ||||||||||| || ||| |||||| Sbjct 13471 GTAATTTTTAGGCAAA----ATGCAAATCTTTGTGAAAACATTAACCGGTAAAACGATCA 13526 Query 26809 CCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAG 26868 | | ||| | ||| | || || ||||| | || || ||||| ||||||| Sbjct 13527 CTTTGGAAGTGGAACCGTCGGATACGATCGAAAATGTAAAGGCGAAGATACAGGACAAAG 13586 Query 26869 AAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATA 26928 ||||||| || || |||||||| |||||||| | || || |||||| | ||||| | Sbjct 13587 AAGGGATTCCCCCGGATCAACAGAGACTCATCTTCGCGGGGAAACAATTGGAAGACGGAC 13646 Query 26929 GAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTA 26988 | | | ||| ||||| ||||| ||||| || ||| ||||| |||| || | || | Sbjct 13647 GGACTCTTTCCGATTATAATATTCAGAAAGAGTCGACTCTCCATTTGGTTCTTCGCCTCA 13706 Query 26989 GAGGAGG 26995 | ||||| Sbjct 13707 GGGGAGG 13713 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| |||||| | || || ||| | || || | ||| | ||| | | | Sbjct 14560 ATGCAAATCTTTGTCAAAACACTCACCGGTAAAACCATTACATTGGAAGTTGAACCGAGC 14619 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | || || || ||| |||||||| || || || |||||||| Sbjct 14620 GATACCATCGAAAATGTAAAGGCCAAAATTCAAGACAAAGAGGGTATTCCCCCCGATCAG 14679 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT-GATAGAAAC-GTCAGCGACTATA 26946 || || | |||| || ||| ||||||||||||||| || | || ||| ||| |||| Sbjct 14680 CAGCGATTGATTTTCGCCGGGAAACAACTCGAAGATGGACGTACACTGTC--CGATTATA 14737 Query 26947 ACATTCAAAAAGAATCTACTATCCA 26971 | || ||||| || || ||| |||| Sbjct 14738 ATATCCAAAAGGAGTCGACTCTCCA 14762 >seq17817 Length=30685 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 ||||||||| | ||||| ||||||||||| ||||| | || || | || | ||| | Sbjct 621 AAAATGCAAATCTTTGTGAAAACATTAACGGGAAAGACCATTACATTAGAGGTCGAACCG 680 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | || || || ||| | || ||| ||||| |||||||||||||| || || ||| Sbjct 681 AGTGATACGATAGAGAATGTAAAAGCGAAGATACAGGACAAAGAAGGGATTCCCCCGGAT 740 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGA 26923 ||||| |||||||||| | || |||||| | ||||| Sbjct 741 CAACAGAGACTCATTTTTGCGGGGAAACAATTGGAAGA 778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477822054307280