Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq8365 241 3e-58 seq48262 89.7 1e-12 >seq8365 Length=5311 Score = 241 bits (266), Expect = 3e-58 Identities = 1113/1739 (64%), Gaps = 54/1739 (3%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 ||||| |||||||| ||| | |||||||| ||| | || || || | || |||| Sbjct 2380 GAACGACCGCAGCACATGCTCATGCGTGTCGCTGTGGGGATACACGGAAATGACATTGAC 2321 Query 363508 GCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACGCACGCCACGCC 363563 || || ||||| || ||||| || || | | | || || ||| ||| | || Sbjct 2320 GCTGCCATTGAGACGTATAATCTCATGTCCGAACGATGGTTTACTCATGCAT----CACC 2265 Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAA-A 363622 ||| ||| |||||| ||||||| | ||||| |||| ||| |||||| | | | Sbjct 2264 GACACTGTTCAATGCCGGAACTCCGCACCCACAATTGTCCAGTTG-TTTCTTATTGACCA 2206 Query 363623 TGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCA 363682 |||| || || || ||||| || | |||||||| || | || ||| | || || | Sbjct 2205 TGAAAGATGACAGTATTGAGGGGATTTACGACACACTCAAACAATGCGCTGTCATATCGA 2146 Query 363683 AGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCACAGAACAGTTACAT 363740 | ||| || || || || || || || || | | || || || ||| || Sbjct 2145 AAGCTGCCGGTGGTATCGGAATAA--ATGTTCATTGCATAAGGGCTAAGGGCACTTATAT 2088 Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 | || || | || ||| || ||||| |||| || ||| | || ||||| |||||| Sbjct 2087 TGCGGGTACGAATGGCATA-TCAAATGGATTGGTCCCGATGTTGCGCGTGTTCAACAATA 2029 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCG 363859 |||| | |||||||| ||||| || || || || || || || | || ||| Sbjct 2028 CTGCCCGATACGTCGATCAGGGGGGGAACAAACGTCCCGGCGCTTTCGCAGTTTACATCG 1969 Query 363860 AGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGG 363919 | || ||||||||| | || || || || || || |||| |||||||| |||| Sbjct 1968 AACCGTGGCATGCCGATGTATTCGAATTCCTCGACCTTAGGAAGAACACGGGTTCTGAGG 1909 Query 363920 AATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCG 363979 || | ||||||||||| ||||||||| |||||| || | || || ||||| || | Sbjct 1908 AAATACGTGCACGTGACTTGTTCTATGGCCTTTGGATTCCCGATTTGTTCATGAAACGTG 1849 Query 363980 TGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATG 364039 | || | | | || |||||| | | || ||||||||||| || ||| | || Sbjct 1848 TTGAATCCGATGGGATATGGTCATTGATGTGTCCACACGAATGCCCGGGTTTACATGACA 1789 Query 364040 TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATG-AATCGGAGGGAAAGGC--TC 364096 |||||| | | | || | | |||| || || || | || | | |||| | | Sbjct 1788 CGTGGGGTCAGGCGTTTGAGGATTTATATGAGAAATACGAAAGAGAAAAGAAATACAAAC 1729 Query 364097 GTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAG 364156 || || ||| || ||| | |||| |||||| | || | ||||| ||||| | Sbjct 1728 GTCAG---GTTCGGGCTCAGTCATTGTGGTATGCCATTGTCGAGGCTCAGATCGAGACGG 1672 Query 364157 GAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTG 364216 | ||||| || ||| | || ||||| |||||||| |||||||| || || | || | Sbjct 1671 GCACACCGTACATGGTTTATAAAGACCATTGCAACCGAAAGTCCAATCAACAAAATCTCG 1612 Query 364217 GTACAATTCA--GCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGA 364274 | || ||| | || | || ||||| || || || ||||||| | |||||||||| Sbjct 1611 GAACCATTAAATGCTCA--AATCTATGCACTGAAATCGTTGAATATTCATCTCCCGACGA 1554 Query 364275 GACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATGG 364328 | |||||| ||||| | || || |||| || ||| || ||| | Sbjct 1553 AATTGCCGTGTGTAATTTGGCTTCAGTCGCACTCAATCGGTTCGTCGACACCAAAACCCG 1494 Query 364329 TACTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGAC 364386 || |||||| | | || | || || | | |||| ||| | || | | Sbjct 1493 CACCTTTGACTTCGCAAAGCTCAAGGATGTCGCTAAAGTCAT--TACCCGAAACTTAAAT 1436 Query 364387 AAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCAT 364446 ||| ||||||| | ||||||||||| |||||||| | || || || |||| | | Sbjct 1435 AAGATTATCGATATTAATTATTATCCCGTTCCTGAAACGGAACGCTCCAATAAAAGGAAC 1376 Query 364447 CGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA--CGTT-TTTATGATGCTCAAGATG 364503 || |||||||| |||| || ||||| | || || |||| || | |||| | Sbjct 1375 CGTCCGATTGGCATTGGAGTTCAGGGATTAGCCGATGCGTTCATTCTCATGCGTTA---C 1319 Query 364504 GCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTT 364563 | ||||| || || || ||| |||| | || ||||| ||| | ||||| Sbjct 1318 CCGTTTGAGAGTCCCGAAGCGAAACGTCTCAATATTCAAATATTTGAGACATTATATTTC 1259 Query 364564 GCCGCAAT-GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGA 364622 | || | || | | ||||| |||||| || | || ||| | ||||| Sbjct 1258 GGGGCTCTCGAAT-CGAGTTGTGAATTGGCACAACAGTATGGTCCTTACGAGTCATATGA 1200 Query 364623 GGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGT 364682 ||| || || || | || | | | |||| ||| | |||||| || || | | Sbjct 1199 GGGTTCTCCCGCCTCTAAAGGGATACTGCAGTATGACATGTGGAATAAGACACCGACAGA 1140 Query 364683 CCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTC-GCAAC--TC 364739 || |||||| ||| | || || | || | ||| || |||| | ||| || Sbjct 1139 CCTATGGAATTGGACTGAACTGAAGGAAAAGATCAAAATGCACGG-ACTCAGGAACAGTC 1081 Query 364740 CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTG 364799 | ||| ||| || ||||| ||||| || || |||||||| | ||||| ||||||| Sbjct 1080 TGTTGTT--AGCACCGATGCCGACGGCATCGACAGCACAGATTTTGGGAAATAACGAGTC 1023 Query 364800 CTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 | ||| ||| ||| || ||| | |||||||| | ||| | ||||||||||||| | Sbjct 1022 TGTTGAAGCGTATACGAGTAATATATATTCACGAAGAGTTTTGTCCGGAGAATTTCAAAT 963 Query 364860 AGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAA 364919 |||||| | | || | | ||| | | || || | || ||| ||| | | || Sbjct 962 CGTTAATCATCATCTTTTGAGAGATTTGACTGAACGTGAACTTTGGAATGATAATCTTAA 903 Query 364920 GAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCT 364979 ||| | || || | | | || || | || ||| ||| |||| | ||| | Sbjct 902 GAATGAAATAATTTCTAATCACGGATCGATTCAATTGATTGAGGGAATTCCCCAGGATTT 843 Query 364980 GAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGC 365039 |||| | |||||||| ||||||||||| || ||| || | ||||| ||| | || Sbjct 842 GAAGGAACTGTACAAAACAGTATGGGAAATATCACAGCGTACAGTTATTGAAATGTCTGC 783 Query 365040 CGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG--CCA 365097 ||||||||| ||||| || || ||||| ||| ||||| |||||| | ||| || Sbjct 782 CGATCGCGGGGCTTTCATTGACCAAAGCCAATCGCTTAAC--ATTCATATCGCAGCACCC 725 Query 365098 ACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 || || ||| | ||||| ||||| || |||| ||||||| || | ||||| || Sbjct 724 ACAATGGCAAAGATCACATCGATGCACTTTCACGGCTGGAAATTGGGGTTAAAGACGGG 666 >seq48262 Length=28504 Score = 89.7 bits (98), Expect = 1e-12 Identities = 237/356 (67%), Gaps = 11/356 (3%) Strand=Plus/Minus Query 18864 GATACCCGATTGAATTATTAATTTTGTACATTCATTACATGGAAATAATGTAACATACAT 18923 ||| ||||| ||||| |||||||| | |||||||||||||| |||| |||||||| | Sbjct 22052 GATTCCCGACTGAATAATTAATTTCGCGCATTCATTACATGGGAATAGCGTAACATAAAG 21993 Query 18924 CGTACATCCATTGACTGATGTACCATTTGCATTTAAAATGGCATTTGCCTCACTGTGTAC 18983 ||||| || ||| | || || ||| | |||||||||| ||| || || Sbjct 21992 TGTACAGTTCTTTACTTCAGCACTGTTCTTATTCATAATGGCATTTAACTCCGCATG-AC 21934 Query 18984 A-ACAAATGGATATTTTGTATCCAGAATGTTTGAATTTTTCTCTTTTTTACCCCACGGGA 19042 | || | || ||||| || || ||||| ||| | | || | |||| || | Sbjct 21933 ACACGTACGGGTATTTCGTGTCAAGAAT------ATTATCGGCGGTTCTTTCCCATGGTA 21880 Query 19043 AATCATCGTCGTTACACCCGCGTGGCATGCCGTTATAACCAATTGATATAATTTTATTTG 19102 | ||||| || || ||| ||||| || || || || || | ||||||| || Sbjct 21879 ATTCATCATCAGAGCATCCGATGGGCATTCCATTGTATCCGATGCCAACAATTTTA-TTC 21821 Query 19103 TCTTTGATTCAATAATACAAGAACCAACCTGTGTGCTTGGATCTTTTGATCGCATTGCTG 19162 || || ||| || ||| || | || ||||| || | || ||||| || |||||| | Sbjct 21820 TC-TTCATT-AACAATGCACGCCCCGACCTGAGTATTGGGGTCTTTGCTTCTCATTGCGG 21763 Query 19163 ATAATTTCGCAACACCCATAAAATACTGATCCCAACTTATATAATCCGCGCGTTTT 19218 |||| | ||||| ||| ||||||| ||| || ||||| |||||||| Sbjct 21762 ATAAATATGCAACGGACATGAAATACTCGGACCACGAAATGTAATCATCGCGTTTT 21707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301008211531118