Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq21107 116 3e-21 seq32426 107 2e-18 seq17817 104 2e-17 seq8365 98.7 9e-16 seq68991 91.5 1e-13 seq14450 86.0 5e-12 >seq21107 Length=15695 Score = 116 bits (128), Expect = 3e-21 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||| | || || ||| | ||||| | ||||| || | | | Sbjct 14560 ATGCAAATCTTTGTCAAAACACTCACCGGTAAAACCATTACATTGGAAGTTGAACCGAGC 14619 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | || || || ||| |||||||| || || || |||||||| Sbjct 14620 GATACCATCGAAAATGTAAAGGCCAAAATTCAAGACAAAGAGGGTATTCCCCCCGATCAG 14679 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168 ||| || |||||| || ||| || |||||||||||| ||| | || ||| |||||||| Sbjct 14680 CAGCGATTGATTTTCGCCGGGAAACAACTCGAAGATGGACGTACACTGTC--CGATTATA 14737 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 | || ||||| || || || | || ||||| ||| Sbjct 14738 ATATCCAAAAGGAGTCGACTCTCCACTTAGTCTTA 14772 Score = 107 bits (118), Expect = 2e-18 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || ||| | ||||| | ||||| ||| | | | Sbjct 13715 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACCATTACATTGGAAGTTGAGCCGAGC 13774 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || || ||| || ||||| || || || |||||||| Sbjct 13775 GATACCATTGAGAATGTTAAGGCCAAAATTCAAGATAAAGAGGGTATTCCCCCCGATCAG 13834 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168 ||| || |||||| || ||| || |||||||||||| ||| | || ||| |||||||| Sbjct 13835 CAGCGATTGATTTTCGCCGGAAAACAACTCGAAGATGGACGTACACTGTC--CGATTATA 13892 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 | |||||||| || || || | || ||||| ||| Sbjct 13893 ATATTCAAAAGGAGTCGACTCTCCACTTAGTCTTA 13927 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 23971 GTACTTTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTA 24030 ||| ||||||| |||| |||||| | ||||| ||||||||||| || ||| |||| | Sbjct 13471 GTAATTTTTAGGCAAA----ATGCAAATCTTTGTGAAAACATTAACCGGTAAAACGATCA 13526 Query 24031 CCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAG 24090 | | ||||| || | || || ||||| | || || ||||| ||||||| Sbjct 13527 CTTTGGAAGTGGAACCGTCGGATACGATCGAAAATGTAAAGGCGAAGATACAGGACAAAG 13586 Query 24091 AAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGAC 24149 |||| || || || |||||||||||||| || | || || || ||| | ||||| ||| Sbjct 13587 AAGGGATTCCCCCGGATCAACAGAGACTCATCTTCGCGGGGAAACAATTGGAAGACGGAC 13646 Query 24150 AGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || | | ||||||||| ||||| ||||| || || | ||||| || Sbjct 13647 GGACTC-TTTCCGATTATAATATTCAGAAAGAGTCGACTCTCCATTTGGT 13695 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || ||| | || || | ||||| || || | Sbjct 13943 ATGCAGATCTTCGTTAAGACTCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCCTCC 14002 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || |||||| || ||||| || || || || |||||| Sbjct 14003 GATACCATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAGGGAATTCCCCCGGATCAA 14062 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAACGTCAGCGATTATAA 24169 |||||||| |||| || || || ||| | || || ||| || | |||||||||| || Sbjct 14063 CAGAGACTTATTTTCGCGGGAAAACAATTGGAGGACGGACGGACTC-TCAGCGATTACAA 14121 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| ||||| || || | |||||||| || Sbjct 14122 TATTCAGAAAGAGTCGACTCTCCATTTAGTATT 14154 >seq32426 Length=2656 Score = 107 bits (118), Expect = 2e-18 Identities = 159/219 (73%), Gaps = 10/219 (5%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||| | | || | |||||| | || || ||| | ||||| | ||||| ||| | | Sbjct 661 AATGCCAATCCTTTTCAAAACACTCACCGGTAAAGCTATTACATTGGAAGTTGAGCCGAG 602 Query 24050 CGACACCATCGAGCAAGTCAAA--CAAAAGATTACCG-ACAAAGAAGGCATACCTCCCGA 24106 ||| |||||||| | || || ||||| ||| | ||||||| || || |||||||| Sbjct 601 CGATACCATCGAAAATGTAAAGGCCAAAA---TACAGGACAAAGAGGGTATTCCTCCCGA 545 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGAT 24164 ||| ||| || |||| | | ||| || |||||||||||| ||| | || ||| | || Sbjct 544 TCAGCAGCGATTGATCTTCTCCGGGAAACAACTCGAAGATGGACGTACACTGTC--CAAT 487 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 ||||| |||||||| || || || | || ||||||||| Sbjct 486 TATAATATTCAAAAGGAGTCGACTCTCCACTTAGTGTTA 448 >seq17817 Length=30685 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||| ||||||||||| ||||| | ||||| | || ||||| | Sbjct 621 AAAATGCAAATCTTTGTGAAAACATTAACGGGAAAGACCATTACATTAGAGGTCGAACCG 680 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | || || || ||| | || ||| ||||| ||||||||||| || || || ||| Sbjct 681 AGTGATACGATAGAGAATGTAAAAGCGAAGATACAGGACAAAGAAGGGATTCCCCCGGAT 740 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAACGTCAGCGATTA 24166 ||||||||||| |||| | || || ||| | ||||| ||| || | | |||||| Sbjct 741 CAACAGAGACTCATTTTTGCGGGGAAACAATTGGAAGACGGACGGACTC-TTTCCGATTA 799 Query 24167 TAACATTCAAAAAG 24180 ||| || ||||||| Sbjct 800 TAATATACAAAAAG 813 >seq8365 Length=5311 Score = 98.7 bits (108), Expect = 9e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 132197 AGATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTA 132256 ||||| ||||| || |||||| |||| || || || ||||||||| || | |||||| Sbjct 948 AGATGATGATTAACGATTTGAAATTCTCCGGACAAAACTCTTCGTGAATATATATTACTC 1007 Query 132257 GTAAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCAT 132315 ||| ||| || | || ||||| |||||||| || || ||||||| |||||||||||| Sbjct 1008 GTATACGCTTCAACAGACTCGTTATTTCCCAAAATCTGTGCTGTCGATGCCGTCGGCAT 1066 >seq68991 Length=328 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 24066 GTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTAC 24125 |||||| || ||| || ||||| || || || || ||||||||| | ||||| | Sbjct 324 GTCAAAGCTAAAATTCAAGATAAAGAGGGTATTCCCCCGGATCAACAGCGTCTGATCTTT 265 Query 24126 GGCGGCAAGCAACTCGAAGATG-ACAGAAACGTCAGCGATTATAACATTCAAAAAGAATC 24184 | ||| || ||| | ||||||| || | || |||| ||||||||||||||||| || || Sbjct 264 GCCGGGAAACAATTGGAAGATGGACGTACAC-TCAGTGATTATAACATTCAAAAGGAGTC 206 Query 24185 TACAATTCATTTAGTGTTA 24203 ||| ||||||| |||||| Sbjct 205 GACACTTCATTTGGTGTTA 187 >seq14450 Length=5806 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | || || || |||||||| ||||| | || || | ||||| || | Sbjct 5471 AAAATGCAAATTTTCGTTAAGACATTAACGGGAAAGACCATCACTTTGGAAGTGGAACCG 5412 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || ||||| ||| | || || ||||| || ||||| || || || || ||| Sbjct 5411 TCTGATACCATTGAGAATGTTAAGGCGAAGATACAGGATAAAGAGGGAATTCCCCCGGAT 5352 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAACGTCAGCGATTA 24166 ||||||||||| |||| || || || ||| | ||||| ||| || | | || ||||| Sbjct 5351 CAACAGAGACTCATTTTCGCGGGGAAACAATTGGAAGACGGACGGACTC-TGAGTGATTA 5293 Query 24167 TAACATTCAAAAAG 24180 ||| || ||||||| Sbjct 5292 TAATATACAAAAAG 5279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429200069009595