Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq8365 250 2e-61 seq21107 104 2e-17 seq68991 93.3 4e-14 seq32426 89.7 5e-13 >seq8365 Length=5311 Score = 250 bits (276), Expect = 2e-61 Identities = 1173/1835 (64%), Gaps = 51/1835 (3%) Strand=Plus/Plus Query 144737 GCCGCTGGCTTGGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAG 144796 ||||| || || || |||||||||||||| ||||| || | ||| | ||| || Sbjct 636 GCCGCGGGTTTCGTACGCAAATAGTACATCCCCGTCTTTAACCCCAATTTCCAGCCGTGA 695 Query 144797 TCGTGTATCGACGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGG 144856 ||| ||||| || ||| || ||||| | || | | | || ||||||||| Sbjct 696 AAGTGCATCGATGTGATCTTTGCCATTGTGGGTGCTGCGATATGAATGTTAAGCGATTGG 755 Query 144857 CTTTGATCAATGAAAGCGTTGCGGTCGGCGGCCATCTCAATCA---TACGTTTGCATTTC 144913 ||||| ||||||||||| ||| ||||| | ||| ||||| | |||| | || Sbjct 756 CTTTGGTCAATGAAAGCCCCGCGATCGGCAGACATTTCAATAACTGTACGCTGTGAT--- 812 Query 144914 ATTTCCCAAGCGGTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGA 144973 |||||||| | || ||||||| || | | | ||||| || |||||| ||| Sbjct 813 ATTTCCCATACTGTTTTGTACAGTTCCTTCAAATCCTGGGGAATTCCCTCAATCAATTGA 872 Query 144974 ATCGACCCCTTGTGCGCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTG 145033 ||||| || | | | || ||| | ||| | | | | |||| | || Sbjct 873 ATCGATCCGTGATTAGAAATTATTTCATTCTTAAGATTATCATTCCAAAGTTC-ACGTTC 931 Query 145034 A-TCAAGTCG-TCAATTAAG-TACTGATTGACGACCTGAAACTCGCCGGCCAACACACGA 145090 | |||| || |||| ||| | ||||| |||| ||||| || |||| ||| || | Sbjct 932 AGTCAAATCTCTCAA--AAGATGATGATTAACGATTTGAAATTCTCCGGACAAAACTCTT 989 Query 145091 CGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCG 145150 || |||| | ||| ||| | | ||||| |||||||||||| |||| || || || Sbjct 990 CGTGAATATATATTACTCGTATACGCTTCAACAGACTCGTTATTTCCCAAAATCTGTGCT 1049 Query 145151 GTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATG 145210 |||| ||| || ||||| || | ||| | || | || |||||| | ||||| Sbjct 1050 GTCGATGCCGTCGGCATCGGTGCTAACAACAGACTGTTCCTGAGTCCGTGCATTTTGATC 1109 Query 145211 TCTTCCTTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTAC 145270 | |||||| || | ||||| |||||| ||||| || | ||||||||| ||| Sbjct 1110 TTTTCCTTCAGTTCAGTCCAATTCCATAGGTCTGTCGGTGTCTTATTCCACATGTCATAC 1169 Query 145271 TGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG 145330 |||| || || | |||||| || | | | || |||| | || | | ||| Sbjct 1170 TGCAGTATCCCTTTAGAGGCGGGAGAACCCTCATATGACTCGTAA-GGACCATACTGTTG 1228 Query 145331 -GCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTT 145389 || | || ||||||| || ||||| |||||||| | |||||| ||||| | || Sbjct 1229 TGCCAATTCACAACTCGATTCGAGAGCCCCGAAATATAATGTCTCAAATATTTGAATATT 1288 Query 145390 GAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAG 145449 ||| | ||||||| ||||| |||| |||| || | || |||||||| | Sbjct 1289 GAGACGTTTCGCTTCGGGACTCTCAAACGGGTAACGCATGAGAATGAACGCATCGGCTAA 1348 Query 145450 CCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTC--- 145506 ||||| | ||| | ||| || | || | ||| | || | | ||| || Sbjct 1349 TCCCTGAACTCCAATGCCAAT---CGGACGGTTCCTTTTATTGGAGCGTTCCGTTTCAGG 1405 Query 145507 GATAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAAT 145566 | ||||| |||| |||||||| ||||| |||||||| | || || | | Sbjct 1406 AACGGGATAATAATTAATATCGATAATCTTATTTAAGTTTCGGGTAATGACTTTAGCGAC 1465 Query 145567 GTGCCGCAACTTTTCAAAGTCAAA---CCGAGCCTCGTCAACGACCACACAGCTATTGAC 145623 | | | |||| | |||||||| || | | | |||| | | | ||||| Sbjct 1466 ATCCTTGAGCTTTGCGAAGTCAAAGGTGCGGGTTTTGGTGTCGACGA---ACCGATTGAG 1522 Query 145624 GGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTG--TATTGTACGATC 145681 |||| || ||||||||||| || || | || ||| | | || |||| ||||| Sbjct 1523 TGCGACTGAAGCCAAATTACACACGGCAATTTCGTCG--GGAGATGAATATTCAACGATT 1580 Query 145682 TCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATT--ACTTTTCCTGT 145739 || | ||| | ||| ||||| |||||||| |||||||| ||||| ||||| | || Sbjct 1581 TCAGTGCATAGATTTGAGCATTTAATGGTTCCGAGATTTTGTTGATTGGACTTT--CGGT 1638 Query 145740 TGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAA 145799 |||| ||| || || | |||||||||| ||| ||||| | ||| | ||| || || Sbjct 1639 TGCAATGGTCTTTATAAACCATGTACGGTGTGCCCGTCTCGATCTGAGCCTCGACAATGG 1698 Query 145800 AACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCC 145859 | ||| ||| || || ||||| | | ||| ||| |||||||||| Sbjct 1699 CATACCACAATGACTGAGCCCGAACCTGACGTTTGTATTTCTTTTCTCTTTCGTATTTCT 1758 Query 145860 TGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGAC 145919 || | ||||||||||| ||| | || | || || || | || |||| Sbjct 1759 CATATAAATCCTCAAACGCCTGACCCCACGTGTCATGTAAACCCGGGCATTCGTGTGGAC 1818 Query 145920 ACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACA 145979 |||||| ||||||| || | || | || || | ||| |||||||| || | ||| | Sbjct 1819 ACATCAATGACCATATCCCATCGGATTCAACACGTTTCATGAACAAATCGGGAATCCAAA 1878 Query 145980 GCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAA 146039 | | || | |||||| || || ||||||| |||| |||| | | | | | Sbjct 1879 GGCCATAGAACAAGTCACGTGCACGTATTTCCTCAGAACCCGTGTTCTTCCTAAGGTCGA 1938 Query 146040 GCACACT---ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTC 146096 | | | | ||| | || || ||||||||||| || || || |||| || || | Sbjct 1939 GGA-ATTCGAATACA--TCGGCATGCCACGGTTCGATGTAAACTGCGAAAGCGCCGGGAC 1995 Query 146097 GTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCT 146153 ||||| || ||||| || |||| || | | ||||| || ||||||| ||| || Sbjct 1996 GTTTGTTCCCCCCCTGATCGACGTATCGGGCAGTATTGTTGAACACGCGCAACATCGGGA 2055 Query 146154 CGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAAT 146213 | | || | | || ||| |||||| || ||||| | | | ||||| Sbjct 2056 CCAATCCATTTGATATGCCATTCGTACCCGCAATATAAGTGCCCTTAGCCCTTATGCAAT 2115 Query 146214 GAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCT 146273 ||||||| | |||| ||| ||| | || ||||| | ||||| | ||| || | Sbjct 2116 GAACATTTATTCCGATACCACCGGCAGCTTTCGATATGACAGCGCATTGTTTGAGTGTGT 2175 Query 146274 CGTAGATGCCGTCAATGCTATC-GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGC 146332 |||| || || ||||| || || ||| | | | | ||||| || | ||| || Sbjct 2176 CGTAAATCCCCTCAATACTGTCATCTTTCATGGTCAATAAGAAA-CAACTGGACAATTGT 2234 Query 146333 GCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAA-CATTTTTCGGCT 146391 | ||| || || || ||||| ||||| || || ||||| ||| ||||| Sbjct 2235 GGGTGCGGAGTTCCGGCATTGAACAGTGTCGGTGATGCATGAGTAAACCATCGTTCGG-A 2293 Query 146392 CATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGAC 146451 ||| | |||||| || || || | | |||||| | || || || |||| |||||| Sbjct 2294 CATGAGATTATACGTCTCAATGGCAGCGTCAATGTCATTTCCGTGTATCCCCACAGCGAC 2353 Query 146452 GCGCATGAGCATGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATA--G 146509 |||||||||||||| || || || ||||| |||| | | ||||| | ||||| Sbjct 2354 ACGCATGAGCATGTGCTGCGGTCGTTCCGCGACTTTCCTATTGATCTTAATTAAATATGA 2413 Query 146510 CCGTTCTCCAGGGTTTTGTATCCGAAAAATTTGTA 146544 ||| ||| || |||||| | |||||| | ||||| Sbjct 2414 CCG--CTCAAGTGTTTTGAAACCGAAATAATTGTA 2446 >seq21107 Length=15695 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| | ||||| || | ||||||||||||||||| || |||||| | Sbjct 13941 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGAC 13882 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || ||| | || || |||||||| || || || Sbjct 13881 AGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGA 13822 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || ||||| || ||||| ||| | | ||| | |||||| | | ||| | Sbjct 13821 ATACCCTCTTTATCTTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACT 13762 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| ||||| ||||| || ||||| || ||||| Sbjct 13761 TCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||||| |||||||| | |||||||| || ||||| ||||||||||| | || || Sbjct 14158 ACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCC 14099 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| | || || || ||| | || | | ||| || ||||| || ||||| ||||| Sbjct 14098 GTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGAATTCCCTCTTT 14039 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || || || ||| | | ||| | ||||||| || || | || | || | Sbjct 14038 ATCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCACTTCCAAAGTGAT 13979 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||| ||||| ||||| || ||||| |||||||| Sbjct 13978 GGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||||| || | || | ||||| ||||||||||| || || || Sbjct 15014 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAG 14955 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||||| || || || || |||| | ||||||||| |||||||| Sbjct 14954 AGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGA 14895 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || ||||| || |||||| || | | || | ||||| | || || | Sbjct 14894 ATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACC 14835 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||||||||| ||||| || ||||| |||||||| Sbjct 14834 TCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| | ||||| || | |||||||||||||| || || |||||| | Sbjct 14786 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGAC 14727 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || ||| | || || |||||||| || || || Sbjct 14726 AGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGA 14667 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||||| ||| | | || | |||||| | | || | Sbjct 14666 ATACCCTCTTTGTCTTGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAACT 14607 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||||||||| || ||||| || || || ||||| Sbjct 14606 TCCAATGTAATGGTTTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||| || ||||| | |||||||| || ||||| ||||||||||| Sbjct 14397 CCCCCGCGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTG 14338 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| | || || || || | || || |||||||| || || || Sbjct 14337 AGAGTCCGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGA 14278 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| |||||||| || || ||| | | || | |||||| | | || | Sbjct 14277 ATTCCCTCTTTGTCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACC 14218 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || ||||| || ||||| Sbjct 14217 TCCAATGTGATGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 >seq68991 Length=328 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 131089 TGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATT 131148 || || || || |||| | |||||| || ||||| || || ||||||||||| ||| Sbjct 26 TGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATT 85 Query 131149 TTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCG 131208 ||| |||| | || | |||||||| || |||| || | |||| |||||||||| Sbjct 86 TTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATGTAATGGTTTTACCG 145 Query 131209 GTTAGAGTTTTTACGAAAATCTGCAT 131234 || |||||||| ||||| || ||||| Sbjct 146 GTGAGAGTTTTCACGAATATTTGCAT 171 >seq32426 Length=2656 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| | |||||| || | ||||||||||||||||| || |||| | | Sbjct 434 CCCCCGCGGAGACGTAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGAC 493 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || || || | | |||| || |||||||| || ||||| Sbjct 494 AGTGTACGTCCATCTTCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGGA 553 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||||| ||| | | || | |||||| | | ||| | Sbjct 554 ATACCCTCTTTGTCCTGTATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGCTCAACT 613 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTT 131219 || | |||| | ||||||||| || ||||| Sbjct 614 TCCAATGTAATAGCTTTACCGGTGAGTGTTTT 645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471184128428160