Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq32426 129 4e-25 seq68991 122 6e-23 seq21107 120 2e-22 seq139880 116 2e-21 seq17817 113 3e-20 seq8604 113 3e-20 seq72705 95.1 8e-15 >seq32426 Length=2656 Score = 129 bits (142), Expect = 4e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 || ||| || | || |||||| || | |||||||| ||||||||||||||||| || Sbjct 203 ATAACCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTC 262 Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 || | | ||| |||| || ||||||||||||||||| || || || |||||||| | Sbjct 263 CGAGAGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGG 322 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 || | || ||||| || |||||| || ||||||| | || ||| ||| Sbjct 323 AGGAATCCCCTCTTTATCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTC 382 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || |||||||| || | | |||||||||||||| ||||| Sbjct 383 CACTTCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 Score = 105 bits (116), Expect = 4e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| ||||| || || ||||| ||||||||||||||| |||| |||| |||| | Sbjct 445 ACGTAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGACAGTGTACGTCC 504 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | |||||| |||| || || | || || ||||||| || | || ||||| Sbjct 505 ATCTTCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGGAATACCCTCTTT 564 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| ||||| ||| ||||| | || ||||| | |||||||| |||||||| Sbjct 565 GTCCTGTATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGCTCAACTTCCAATGTAAT 624 Query 38282 AGTTTTACCCGTCAAGGTTTT 38302 || |||||| || | ||||| Sbjct 625 AGCTTTACCGGTGAGTGTTTT 645 >seq68991 Length=328 Score = 122 bits (134), Expect = 6e-23 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 38156 ACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCC 38215 |||| | || || ||||||||||||||||| || || || |||||||| | ||| | || Sbjct 10 ACGTCCATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCC 69 Query 38216 TTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAA 38275 |||||||||| ||||| || ||||| | || |||||| ||| ||||| || Sbjct 70 TTCTTTGTCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAA 129 Query 38276 TGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| |||||||| || | |||||||||||||| ||||| Sbjct 130 TGTAATGGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| |||||||||||||| || |||||||||||| || |||||| | |||| | Sbjct 184 ACGTAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCACTGAGTGTACGTCC 243 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || |||||||| |||||||| || || || |||||||| | ||| | || ||||| Sbjct 244 ATCTTCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATACCCTCTTT 303 Query 38222 GTCCATAATTTTTTGCTTCACATTC 38246 || |||||| || |||||| Sbjct 304 ATCTTGAATTTTAGCTTTGACATTC 328 >seq21107 Length=15695 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| ||||| ||| || |||||||| ||||| || | | ||| |||| || Sbjct 13695 ACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCTTCC 13636 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 |||||||| || || || || || | |||||||| | ||| | |||||||||||| Sbjct 13635 AATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGT 13576 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAATAGTTTT 38287 || || ||| ||||| | || ||||| | || ||| ||||| || || || ||||| Sbjct 13575 ATCTTCGCCTTTACATTTTCGATCGTATC-CGACGGTTCCACTTCCAAAGTGATCGTTTT 13517 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| || || |||||||| || || ||||| || Sbjct 13516 ACCGGTTAATGTTTTCACAAAGATTTGCATTTT 13484 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| || || || || ||||| ||||||||||||||| ||||| |||| |||| | Sbjct 13930 ACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGTCC 13871 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | |||||||||||| || || | || || ||||||| ||| | || ||||| Sbjct 13870 ATCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTT 13811 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 || |||||| ||| ||||||| | ||||| | |||||||| |||||||| Sbjct 13810 ATCTTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAAT 13751 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || | || || ||||| || ||||| Sbjct 13750 GGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 || ||| || | || |||||| || | |||||||| |||||||||||||| || || Sbjct 15018 ATAACCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTC 14959 Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 || | | ||| |||| |||||||||||||||||||| || || || || ||||| | Sbjct 14958 CGAGAGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGG 14899 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 || | || ||||| || |||||| ||||| || | || ||||| ||| Sbjct 14898 AGGAATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTC 14839 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| || |||||||| || | || || ||||| |||||||| Sbjct 14838 CACCTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || || | |||||| || ||||| ||||| ||| || |||||||||||||| Sbjct 14171 TACCTCCCCTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGC 14112 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| |||| || ||||||||||| || || || || | |||||||| | || Sbjct 14111 TGAGAGTCCGTCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGG 14052 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || ||||| ||| ||| || ||| ||||||| | ||||| ||| | Sbjct 14051 GAATTCCCTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCA 13992 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || || | || || ||||| |||||||| Sbjct 13991 CTTCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||| |||||||| ||||| ||| || |||||||||||||| | | ||| || Sbjct 14385 CGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCG 14326 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || |||||||| || ||||| || | || || ||||||| ||| | || |||||| Sbjct 14325 TCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTCTTTG 14266 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || ||| || ||| || || | || |||||| ||| || || ||||| || Sbjct 14265 TCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAATGTGATG 14206 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || | || || ||||| || ||||| Sbjct 14205 GTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 >seq139880 Length=629 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| | Sbjct 257 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCAC 316 Query 20007 GGTAATATTTAGCCTTA 20023 || | |||||||||||| Sbjct 317 GGCAGTATTTAGCCTTA 333 >seq17817 Length=30685 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38130 TTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATT 38189 ||||| ||||| ||||| || | | ||| |||| || |||||||| || ||||| || Sbjct 811 TTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAATG 752 Query 38190 AGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGG 38249 || | |||||||| | ||| | |||||||||||| || || || ||||||| Sbjct 751 AGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCTCT 692 Query 38250 ACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309 | ||||| | ||| || ||||||||||| || || ||||| || |||||||| || Sbjct 691 ATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAAAG 632 Query 38310 ATCTGCATGTTT 38321 || ||||| ||| Sbjct 631 ATTTGCATTTTT 620 >seq8604 Length=7606 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 2044 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 2103 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 2104 GCCAATATTTAGCTTTA 2120 >seq72705 Length=2132 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||| || || | |||| ||||| | Sbjct 1766 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTAATTATTTGTTATCCGTCTCAC 1825 Query 20007 GGTAATATTTAGCCTTA 20023 || | |||||| ||||| Sbjct 1826 GGCAGTATTTATCCTTA 1842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334373863446119