Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq8365 666 0.0 seq21474 136 5e-27 >seq8365 Length=5311 Score = 666 bits (738), Expect = 0.0 Identities = 1541/2296 (67%), Gaps = 62/2296 (3%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||||||||| | | | |||||||||||||| | ||||||||| ||||| |||| Sbjct 618 GTGAATTGAATAGCATTTGCCGCGGGTTTCGTACGCAAATAGTACATCCCCGTCTTTAAC 677 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAG-TTTGGAATAACTCGGATCTGCTAT 61968 || | |||| |||| ||| ||||| || | |||| || | || |||| || Sbjct 678 CCCAATTTCCAGCCGTGAAAGTGCATCGATGTGATCTTTGCCATTG-TGGGTGCTGCGAT 736 Query 61969 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62028 ||| || || | ||||| ||||| || ||||| || || | || |||| ||||| || Sbjct 737 ATGAATGTTAAGCGATTGGCTTTGGTCAATGAAAGCCCCGCGATCGGCAGACATTTCAAT 796 Query 62029 AATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62088 || || |||| |||||||| | ||||| || | | ||| | ||| | |||| Sbjct 797 AACTGTACGCTGTGATATTTCCCATACTGTTTTGTACAGTTCCTTCAAATCCTGGGGAAT 856 Query 62089 GTTTGTATTC---TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 | || ||||| ||||| || | || || |||||| | | |||||| Sbjct 857 TCCCTCAATCAATTGAATCGATCCGTGATTAGAAATTATTTCATTCTTAAGATTATCATT 916 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||| | || | || || ||| |||| | ||||| ||||||| | |||||||||||| Sbjct 917 CCAAAGTTCACGTTCAGTCAAATCTCTCAAAAGATGATGATTAACGATTTGAAATTCTCC 976 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 ||||| ||||| || | || |||||||| ||||||| ||| |||||||| |||||||| Sbjct 977 GGACAAAACTCTTCGTGAATATATATTACTCGTATACGCTTCAACAGACTCGTTATTTCC 1036 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325 |||||| || || || ||||| |||||||| ||||| | ||| | ||| || || || || Sbjct 1037 CAAAATCTGTGCTGTCGATGCCGTCGGCATCGGTGCTAACAACAGACTGTTCCTGAGTCC 1096 Query 62326 GTATGTTCTGATTTTATCTTTTAGAGGTTC---CCAATTCCAAAGATCCGACGGTACAAC 62382 || || |||| || || || || ||| ||||||||| || || | |||| Sbjct 1097 GTGCATTTTGATCTTTTCCTTCAG---TTCAGTCCAATTCCATAGGTCTGTCGGTGTCTT 1153 Query 62383 NNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTA 62442 || || || || ||| |||| || || |||||| ||||| Sbjct 1154 ATTCCACATGTCATACTGCAGTATCCCTTTAGAGGCGGGAGAACCCTCATATGACTCGTA 1213 Query 62443 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62502 || || | || | || | ||||||||||| || | || ||| |||| | || || Sbjct 1214 AGGACCATACTGTTGTGCCAATTCACAACTCGATTCGAGAGCCCCGAAATATAATGTCTC 1273 Query 62503 GAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 62562 || || | |||| ||| || |||||| | || ||||| || ||| | |||||| Sbjct 1274 AAATATTTGAATATTGAGACGTTTCGCTTCGGGACTCTCAAACGGGTAACGCATGAGAAT 1333 Query 62563 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62622 ||||| || |||||||| ||||| ||||| || || || | | || ||||| ||| Sbjct 1334 GAACGCATCGGCTAATCCCTGAACTCCAATGCCAATCGGACGGTTCCTTTTATTGGAGCG 1393 Query 62623 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 62682 ||| | ||| |||| ||||||||||||||||| ||||| ||||| | |||| | ||| Sbjct 1394 TTCCGTTTCAGGAACGGGATAATAATTAATATCGATAATCTTATTTAAGTTTCGGGTAAT 1453 Query 62683 TACTTTGACCACATCCTTCAG-TTTGAGAAAATCAAATCGCCCATCTATT-------ACA 62734 ||||| | |||||||| || |||| ||| ||||| | | | || || Sbjct 1454 GACTTTAGCGACATCCTTGAGCTTTGCGAAG-TCAAAG-GTGCGGGTTTTGGTGTCGACG 1511 Query 62735 AACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATAT 62794 ||| || | ||| || || |||| |||||| ||||| | || | | | | |||| Sbjct 1512 AACCGATTGAGTGCGACTGAAGCCAAATTACACACGGCAATTTCGTCGGGAGATGAATAT 1571 Query 62795 TGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 62854 | | || |||||||| ||||| || || |||||||| | |||||||||||| | Sbjct 1572 TCAACGATTTCAGTGCATAGATTTGAGCATTTAATGGTTCCGAGATTTTGTTGATTGGAC 1631 Query 62855 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 62914 ||| ||| || || ||||||| ||| | || || || || || ||||||| || Sbjct 1632 TTTCGGTTGCAATGGTCTTTATAAACCATGTACGGTGTGCCCGTCTCGATCTGAGCCTCG 1691 Query 62915 ATAATCGCTTTCCAGAC-GACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTC 62973 | ||| || | ||| | |||| ||||| | | ||||||| ||||||||||||| Sbjct 1692 ACAATGGCATACCACAATGACT-GAGCCCGAACCTGACGTTTGTATTTCTTTTCTCTTTC 1750 Query 62974 GTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGT---CCAGGACA 63030 |||| ||| || || ||| | | ||||| |||| || || || || Sbjct 1751 GTATTTCTCATATAAATCCTCAAACGCCTGACCCCACG---TGTCATGTAAACCCGGGCA 1807 Query 63031 TTCATCCGGACACATCAACGACCACTCTCCGTCATCC--TTCA-CTCGTTTCATAAAGAG 63087 ||| | ||||||||||| ||||| | ||| |||| |||| | |||||||| || | Sbjct 1808 TTCGTGTGGACACATCAATGACCA-TATCC--CATCGGATTCAACACGTTTCATGAACAA 1864 Query 63088 ATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTC-TATGTTCCTCGTTTCCTGTA 63145 ||| ||||||||||| || ||| || | || | | | ||| |||||| || || Sbjct 1865 ATCGGGAATCCAAAG-GCCATAGAACAAGTCACGTGCACGTAT-TTCCTCAGAACCCGTG 1922 Query 63146 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63205 ||||| |||| |||||||| | | | ||| | |||||||||||| | ||| | || Sbjct 1923 TTCTTCCTAAGGTCGAGGAATTCGAATACATCGGCATGCCACGGTTCGATGTAAACTGCG 1982 Query 63206 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63265 | | | || || |||||||| || |||||||| | ||||| || || || || | || Sbjct 1983 AAAGCGCCGGGACGTTTGTTCCCCCCCTGATCGACGTATCGGGCAGTATTGTTGAACACG 2042 Query 63266 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTG 63325 | |||||| || | | ||||| ||| | ||||| || || | ||||| | || | Sbjct 2043 CGCAACATCGGGACCAATCCATTTGATATGCCATTCGTACCCGCAATATAAGTGCCCTTA 2102 Query 63326 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385 || | || | || || || || || || || ||| || || | |||||| Sbjct 2103 GCCCTTATGCAATGAACATTTATTCCGATACCACCGGCAGCTTTCGATATGACAGCGCAT 2162 Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445 |||| | || || || || ||||| ||||| ||||| ||||| | | || ||||| Sbjct 2163 TGTTTGAGTGTGTCGTAAATCCCCTCAATACTGTCATCTTTCATGGTCAATAAGAAACAA 2222 Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || |||| ||| | | |||||| ||||| || | || || || || ||||||||| Sbjct 2223 CTGGACAATTGTGGGTGCGGAGTTCCGGCATTGAACAGTGTCGGTGATGCATGAGTAAAC 2282 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 ||| ||| || | ||||| ||||||||||| || | ||| || || | || || Sbjct 2283 CATCGTTCGGACATGAGATTATACGTCTCAATGGCAGCGTCAATGTCATTTCCGTGTATC 2342 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 || || ||||||||||| | ||||||||| |||| ||| ||| || | || || || Sbjct 2343 CCCACAGCGACACGCATGAGCATGTGCTGCGGTCGTTCCGCGACTTTCCTATTGATCTTA 2402 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT-ATGAAAAGTCTCGTTC 63684 | || || || || | ||||| ||||| ||||| |||| |||| || || || || Sbjct 2403 ATTAAATATGACCGCTCAAGTGTTTTGAAACCGAAATAATTGTAATGATAA-TCGCGATC 2461 Query 63685 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 63744 ||||| || | || |||||| || || || | || ||||| |||| || Sbjct 2462 ATAAATGATGGCGGAATTGAGTCGTTCGGCATTCTTTTCAATGACATC----GTAAATCT 2517 Query 63745 ----TGAAATAATAGGAAAATGTTT----CCCATT-TTTAGGATTGACATAGTTGA-ATA 63794 |||||| || || ||||| ||||| | | || |||| ||| | | Sbjct 2518 CATCTGAAATCATCGG----TGTTTTGAGACCATTACTCTCGTTTCTCATA--TGATAGA 2571 Query 63795 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTA 63854 |||| || || || ||| ||| ||||||||||| |||| |||||| || || | Sbjct 2572 GATCCCTAATGACATCGGAAAAGTTTTTCTTTGTTTCTTTATGTAAATTTGACACTGCAA 2631 Query 63855 TTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGG 63914 | | || || ||||| |||||||| | ||||| || || || || || ||||| | Sbjct 2632 TACGTGCCGCGAGAATAGCATAATCGGCATGTTTCGTTGTCATTGTTGCGGCGATTTCCG 2691 Query 63915 CTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCA 63974 | || | | | |||||||| || || || ||||| |||||| || ||| ||||||| Sbjct 2692 CCGCTAAATTATCCAATTCAACGGTCGTGACACCCGAATATATCCCGGCGATGACCTTCA 2751 Query 63975 TAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATAC 64034 | ||| | ||| || | || ||| || ||||| || | ||| || | Sbjct 2752 ATGTGATTGACGGTGCATCGATGTAATTCATGTCCAAACCATAGCAGAGTTTCACGATTC 2811 Query 64035 GAGATGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACA 64094 | ||||||||||| || ||||| || ||| || ||| | || |||||| ||| ||| Sbjct 2812 GGGATGTGATTTTGTCGAACATAACTGATTCTTTTCGTCCGTCTCTTTTAATTACATACA 2871 Query 64095 TTTTTGTTGGTGTAAT 64110 |||||| |||| ||| Sbjct 2872 TTTTTG-CGGTGCAAT 2886 >seq21474 Length=6928 Score = 136 bits (150), Expect = 5e-27 Identities = 153/202 (76%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 33043 CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33102 ||||||| ||||| || ||||||||||| || || ||||||||||| |||||| ||||| Sbjct 4578 CTAAATTCTCATTAACGATTCCGTCACTCGCAGCGAAAAACGCCAAAACATGTGATATAA 4519 Query 33103 AATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCCACT 33161 ||| ||| | || || ||| | | |||||| | ||||| | | ||||||| Sbjct 4518 AATGACGTTCAT-TGTCATTGAGTCTGTGCCAATCGGTCATATCCCGACTCAAATCCACT 4460 Query 33162 TCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATAT 33221 ||||| || |||||||| ||||||||||| || |||||||| |||| || || ||||| Sbjct 4459 TCTTCGACAGTCCAAAACGATGCCTCTGCTTTCTTATACATCATCCAAATATCGTGATAC 4400 Query 33222 TGAATTGGAAAAATAACAAATC 33243 | ||| || || || || |||| Sbjct 4399 TCAATCGGGAACATTACGAATC 4378 Score = 129 bits (142), Expect = 7e-25 Identities = 227/331 (69%), Gaps = 0/331 (0%) Strand=Plus/Minus Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534 ||||||||| | || | ||| |||||| |||| || |||| ||||||| | |||| Sbjct 6056 CCCAATTCAATGAGTAAACGATCAGCGACATATTCAATGTATGACTTCATCAGTACACAG 5997 Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 ||||| || || ||| || ||||| || | || | ||| || |||||||| | || Sbjct 5996 TTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACA 5937 Query 32595 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 32654 || || || | |||| | | | ||| | | ||| || | | ||||||||| Sbjct 5936 GCTTCAGTAACAATACGAGTGATTTGTTCGACCGTTGGTTTATTAACGATATGTTTAAAG 5877 Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 | ||||| |||||||| || || || ||||| || | || | ||| || || Sbjct 5876 AGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTCATTACTGAAG 5817 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 32774 || | ||| ||||| || ||||| || || ||||||||||| || || ||||| || | Sbjct 5816 GTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCGCTA 5757 Query 32775 AAGAAAATTCCTTCTACTGCCGCAAAGGCAA 32805 ||||| || || || |||| ||||| |||| Sbjct 5756 AAGAATATACCCTCAACTGATGCAAACGCAA 5726 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 32927 AACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTG 32986 || ||| || |||||||| |||||||||||||||||||| || || ||||| || ||||| Sbjct 5241 AATATACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAATTGCAATTTG 5182 Query 32987 AAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGC 33043 ||| ||||| ||||||| || || |||| || ||||| | |||||||| || Sbjct 5181 AAACCCGTAAAAGCATCGCGCTTCAGTAACTTGAACTTCACGAACGAATCGTTCCGC 5125 Score = 86.0 bits (94), Expect = 8e-12 Identities = 111/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 32313 CTTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATT 32369 ||| ||||||| |||| | | ||| | || ||||||| | ||||| || || | Sbjct 6527 CTTCAAAAGTCCGCATCCAAAACAAATTTATGCTCTTCTTTATTGGACATTACACCACTC 6468 Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 ||||| ||||| || || | || || || ||||| ||||| || || ||||| || | | Sbjct 6467 TTTTGATATTCGCCGACTCTCTTCTCAAAGAAATTCGTTTTCCCCTCCAATGAAATCTGT 6408 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAA 32462 |||||||||||||| ||||| | ||||||| Sbjct 6407 TCCATGAAATCGAAAGGATTCGACGAATTATAA 6375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632519587740400