Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq21107 138 1e-27 seq68991 122 8e-23 seq32426 116 3e-21 seq17817 104 2e-17 >seq21107 Length=15695 Score = 138 bits (152), Expect = 1e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || |||||||| | || ||||| ||||| Sbjct 14171 ATGCAAATCTTCGTCAAGACACTCACCGGAAAGACCATCACATTGGAGGTGGAACCGTCT 14230 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| | ||| | || | ||| |||||||| || ||||| || || || Sbjct 14231 GATACTATCGAAAACGTTAAGGCTAAGATTCAA-GACAAAGAGGGAATTCCCCCCGATCA 14289 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | |||||||| || |||||||| || || | || ||| | |||||||||| Sbjct 14290 GCAGCGGTTGATTTTTGCGGGGAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAA 14349 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| || || || ||||| || || Sbjct 14350 TATTCAGAAAGAGTCGACTCTCCATTTGGTACT 14382 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || || ||||||||| | ||||| | |||||||| |||| Sbjct 13486 AATGCAAATCTTTGTGAAAACATTAACCGGTAAAACGATCACTTTGGAAGTGGAACCGTC 13545 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| || || ||||||||||||||||| || || || Sbjct 13546 GGATACGATCGAAAATGTAAAGGCGAAGATACAGGACAAAGAAGGGATTCCCCCGGATCA 13605 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || || || || |||||||| ||||| | || ||| | |||||| || Sbjct 13606 ACAGAGACTCATCTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGATTATAA 13665 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| ||||| || || || ||||| || || | || || ||||| Sbjct 13666 TATTCAGAAAGAGTCGACTCTCCATTTGGTTCTTCGCCTCAGGGGAGG 13713 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||||||| |||||||| | || ||||| | ||| Sbjct 14788 ATGCAGATCTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAGGTGGAACCCTCT 14847 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| |||| || |||| ||| || ||||| |||||||| || || || Sbjct 14848 GATACCATCGAAAACGTGAAAGCGAAAATTCAA-GATAAAGAGGGGATTCCTCCGGATCA 14906 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || |||||||| ||||||||||| || | || ||| | || || || Sbjct 14907 GCAGCGTCTGATCTTTGCCGGAAAACAATTAGAGGACGGCCGTACTCTCTCGGACTATAA 14966 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||||||| ||||| || || || Sbjct 14967 TATTCAAAAGGAATCGACTCTTCA 14990 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| ||| ||||||| | |||||||| | || Sbjct 13943 ATGCAGATCTTCGTTAAGACTCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCCTCC 14002 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | ||| | || | ||| || ||||| || ||||| || || || Sbjct 14003 GATACCATTGAGAATGTTAAGGCCAAGATTCAG-GATAAAGAGGGAATTCCCCCGGATCA 14061 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | ||||||| || || |||||||| || || | || ||| | |||||||||| Sbjct 14062 ACAGAGACTTATTTTCGCGGGAAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAA 14121 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| ||||| || || || |||||||| | | || || ||||| Sbjct 14122 TATTCAGAAAGAGTCGACTCTCCATTTAGTATTGCGTCTCAGGGGAGG 14169 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | ||||| ||| |||| ||| | ||||| ||| || Sbjct 13715 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACCATTACATTGGAAGTTGAGCCGAGC 13774 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | ||| | |||| ||| || ||||| || ||||| || || || Sbjct 13775 GATACCATTGAGAATGTTAAGGCCAAAATTCAA-GATAAAGAGGGTATTCCCCCCGATCA 13833 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| ||||| |||||| | ||||||| || || || |||||| || Sbjct 13834 GCAGCGATTGATTTTCGCCGGAAAACAACTCGAAGATGGACGTACACTGTCCGATTATAA 13893 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||| || || || || || ||||| Sbjct 13894 TATTCAAAAGGAGTCGACTCTCCACTTAGT 13923 >seq68991 Length=328 Score = 122 bits (134), Expect = 8e-23 Identities = 125/161 (78%), Gaps = 8/161 (5%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || || ||| | ||||||||| |||| ||| | ||||| || | || Sbjct 171 ATGCAAATATTCGTGAAAACTCTCACCGGTAAAACCATTACATTGGAAGTCGAACCCTCC 112 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| |||| || ||||||||||||||||| || || Sbjct 111 GATACTATCGAAAATGTCA---AAGCGAAAATACAG-GACAAAGAAGGGATTCCCCCGGA 56 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 |||||||| | || |||||||| |||||||| ||||||| Sbjct 55 TCAACAGCGTCTGATCTTTGCCGGAAAACAATTGGAAGATG 15 >seq32426 Length=2656 Score = 116 bits (128), Expect = 3e-21 Identities = 151/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || || || | | ||| ||| | ||||| | |||||||| | || Sbjct 433 ATGCAAATATTCGTGAAAACACTCATCGGCAAAACTATCACTTTGGAAGTGGAACCCTCA 374 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| ||| || ||||| |||||||| || || Sbjct 373 GACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GATAAAGAGGGGATTCCTCCGGAT 317 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || |||||||| |||||||| || || | || ||| | || ||| Sbjct 316 CAACAGCGTCTGATCTTTGCCGGAAAACAATTGGAGGACGGCCGTACTCTCTCGGACTAC 257 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 ||||||||||| ||||| || || || Sbjct 256 AATATTCAAAAGGAATCGACTCTTCA 231 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||| ||| || | || || | ||||||||| | || ||| | ||||| ||| || Sbjct 661 AATGCCAATCCTTTTCAAAACACTCACCGGTAAAGCTATTACATTGGAAGTTGAGCCGAG 602 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| ||||| |||||||| || ||||| || || || Sbjct 601 CGATACCATCGAAAATGTAAAGGCCAAAATACAGGACAAAGAGGGTATTCCTCCCGATCA 542 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || |||| |||||| | ||||||| || || || | |||| || Sbjct 541 GCAGCGATTGATCTTCTCCGGGAAACAACTCGAAGATGGACGTACACTGTCCAATTATAA 482 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||||||||| || || || || || |||||| || Sbjct 481 TATTCAAAAGGAGTCGACTCTCCACTTAGTGTTA 448 >seq17817 Length=30685 Score = 104 bits (114), Expect = 2e-17 Identities = 143/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| ||||| || || || || || || |||| ||| | || || || | Sbjct 620 AAAAATGCAAATCTTTGTGAAAACATTAACGGGAAAGACCATTACATTAGAGGTCGAACC 679 Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 | ||| || || ||| | || |||| || | || ||||||||||||||||| || Sbjct 680 GAGTGATACGATAGAG--AATGTAAAAGCGAAGATACAG-GACAAAGAAGGGATTCCCCC 736 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || |||||| | | |||||||| || |||||||| ||||| | || ||| | ||| Sbjct 737 GGATCAACAGAGACTCATTTTTGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGA 796 Query 25172 TTACAATATTCAAAAAG 25188 ||| ||||| ||||||| Sbjct 797 TTATAATATACAAAAAG 813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432586262847935