Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq21474 120 3e-22 seq61718 104 3e-17 >seq21474 Length=6928 Score = 120 bits (132), Expect = 3e-22 Identities = 199/284 (70%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 93061 TGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTC 93120 |||||| | |||| || || | | ||| ||||| || || ||| | || || || Sbjct 5901 TGGTTTATTAACGATATGTTTAAAGAGTAAACACGCGAAATCACAATGAAGTCCCTCATC 5842 Query 93121 TCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCA 93180 |||||||||| ||||| ||||| || || || || | ||||| |||||||| ||||| Sbjct 5841 ACGTGATATCAGTTCATTACTGAAGGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCA 5782 Query 93181 AAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAAT 93240 ||||||||| || || ||| ||| |||||||| || || | |||||| || || | Sbjct 5781 AAATATTGAGGCGAATGAACCGCTAAAGAATATACCCTCAACTGATGCAAACGCAACTAA 5722 Query 93241 ACGTTCGGCAAAATTTGCGGAATTACTGCTGA--TCCATTTTAAAGCCCAATCGGCTTTT 93298 ||||||||| |||| || | | || | | || |||| | ||||| | ||| ||| Sbjct 5721 ACGTTCGGC-AAATGTG-GCAGTTTCCGACGATGTCCACGACAGTGCCCATTTGGCCTTT 5664 Query 93299 TTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 | | || || || |||||||| || || |||||| |||| Sbjct 5663 CGGGTCACGCACGGGAGGGTTTCGATCGCATTGAATAGGAAATC 5620 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 ||| | ||| ||||| || || || || || || ||||| ||||| | ||| ||| Sbjct 4580 TACTAAATTCTCATTAACGATTCCGTCACTCGCAGCGAAAAACGCCAAAACATGTGATAT 4521 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGAC 93594 |||||| |||| || || || | | |||||||| | ||| | ||| || Sbjct 4520 AAAATGACGTTCATTGTCATTGAGTCTGTGCCAATCGGTCATATCCCGACTCAAATCCAC 4461 Query 93595 TTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATA 93654 |||||||||||||||||||||||| |||||||| || ||||| ||| || || ||||| Sbjct 4460 TTCTTCGACAGTCCAAAACGATGCCTCTGCTTTCTTATACATCATCCAAATATCGTGATA 4401 Query 93655 TTGAATTGGAAATATGACAAAACG 93678 | ||| || || || || || || Sbjct 4400 CTCAATCGGGAACATTACGAATCG 4377 >seq61718 Length=13506 Score = 104 bits (114), Expect = 3e-17 Identities = 76/87 (87%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| |||||||||||| |||| | | Sbjct 7239 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGATCTGGT--CCTCATATGAGG 7296 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||| ||||||| Sbjct 7297 GCGTGGGTTCGAACCCCACTCCTGACA 7323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555883168218760