Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq21107 125 6e-24 seq17817 114 1e-20 seq68991 93.3 4e-14 seq32426 89.7 4e-13 seq14450 82.4 6e-11 >seq21107 Length=15695 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||||||||| | ||||| ||||||||||| ||||| ||||| ||| Sbjct 14560 ATGCAAATCTTTGTCAAAACACTCACCGGTAAAACCATTACATTGGAAGTTGAACCGAGC 14619 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | ||||| |||||| |||||||| || ||||| |||||| Sbjct 14620 GATACCATCGAAAATGTAAAGGCCAAAATTCAAGACAAAGAGGGTATTCCCCCCGATCAG 14679 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | |||| || || |||||| | |||||| || || ||||||||||| Sbjct 14680 CAGCGATTGATTTTCGCCGGGAAACAACTCGAAGATGGACGTACACTGTCCGATTATAAT 14739 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || || ||||| || ||||| ||||| || Sbjct 14740 ATCCAAAAGGAGTCGACTCTCCACTTAGTCTTACGTCTCCGCGGGGG 14786 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || ||||| || | ||||||||||||||||| ||||| || || ||| Sbjct 13715 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACCATTACATTGGAAGTTGAGCCGAGC 13774 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || |||||| || ||||| || ||||| |||||| Sbjct 13775 GATACCATTGAGAATGTTAAGGCCAAAATTCAAGATAAAGAGGGTATTCCCCCCGATCAG 13834 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | |||| || || |||||| | |||||| || || ||||||||||| Sbjct 13835 CAGCGATTGATTTTCGCCGGAAAACAACTCGAAGATGGACGTACACTGTCCGATTATAAT 13894 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || || ||||| || ||||| ||||| || Sbjct 13895 ATTCAAAAGGAGTCGACTCTCCACTTAGTCTTACGTCTCCGCGGGGG 13941 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || || || || | |||||||||||||| || ||||| ||||||| | Sbjct 13943 ATGCAGATCTTCGTTAAGACTCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCCTCC 14002 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || || ||| || ||||| || ||||| |||||| Sbjct 14003 GATACCATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAGGGAATTCCCCCGGATCAA 14062 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || ||||||| ||||| ||||||||||| || ||| | |||||| ||| Sbjct 14063 CAGAGACTTATTTTCGCGGGAAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAAT 14122 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCT 111404 || || ||||| || || || |||||||| |||||||| Sbjct 14123 ATTCAGAAAGAGTCGACTCTCCATTTAGTATTGCGTCT 14160 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 ||||||||||| ||||| ||||| | ||||| ||||| || || ||||| |||||| Sbjct 13484 AAAATGCAAATCTTTGTGAAAACATTAACCGGTAAAACGATCACTTTGGAAGTGGAACCG 13543 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| | | | | ||||| || || ||||||||||| ||||| ||| Sbjct 13544 TCGGATACGATCGAAAATGTAAAGGCGAAGATACAGGACAAAGAAGGGATTCCCCCGGAT 13603 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 ||||| || || || | ||||| |||||||||||||| ||| | |||||||| Sbjct 13604 CAACAGAGACTCATCTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGATTAT 13663 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGT 111395 ||||| || ||||| || || || ||||| || Sbjct 13664 AATATTCAGAAAGAGTCGACTCTCCATTTGGT 13695 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || ||||| || | ||||| || ||||| || |||| |||||| Sbjct 14171 ATGCAAATCTTCGTCAAGACACTCACCGGAAAGACCATCACATTGGAGGTGGAACCGTCT 14230 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || | | | || || || ||| |||||||| || ||||| |||||| Sbjct 14231 GATACTATCGAAAACGTTAAGGCTAAGATTCAAGACAAAGAGGGAATTCCCCCCGATCAG 14290 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || | |||| |||||| ||||||||||| || ||| | |||||| ||| Sbjct 14291 CAGCGGTTGATTTTTGCGGGGAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAAT 14350 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| || || || ||||| || |||| || ||||| || Sbjct 14351 ATTCAGAAAGAGTCGACTCTCCATTTGGTACTGCGACTTCGCGGGGG 14397 >seq17817 Length=30685 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 111181 TTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAA 111240 |||||||||||||| ||||| ||||| | || || || |||||||| | || ||| Sbjct 618 TTAAAAATGCAAATCTTTGTGAAAACATTAACGGGAAAGACCATTACATTAGAGGTCGAA 677 Query 111241 CCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC 111300 || || ||| | | | | |||||| || || ||||||||||| ||||| Sbjct 678 CCGAGTGATACGATAGAGAATGTAAAAGCGAAGATACAGGACAAAGAAGGGATTCCCCCG 737 Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360 |||||||| || || |||| |||||| |||||||||||||| ||| | ||||| Sbjct 738 GATCAACAGAGACTCATTTTTGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGAT 797 Query 111361 TATAATATACAAAAAG 111376 |||||||||||||||| Sbjct 798 TATAATATACAAAAAG 813 >seq68991 Length=328 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| | ||||| ||||||||||| ||||| |||||| | Sbjct 171 ATGCAAATATTCGTGAAAACTCTCACCGGTAAAACCATTACATTGGAAGTCGAACCCTCC 112 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || | | | || ||| ||||| ||||||||||| ||||| |||||| Sbjct 111 GATACTATCGAAAATGTCAAAGCGAAAATACAGGACAAAGAAGGGATTCCCCCGGATCAA 52 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT 111342 || | || || | ||| || ||||||||||||||| Sbjct 51 CAGCGTCTGATCTTTGCCGGAAAACAATTGGAAGAT 16 >seq32426 Length=2656 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| | | ||||||||| || || ||||| ||||||| Sbjct 433 ATGCAAATATTCGTGAAAACACTCATCGGCAAAACTATCACTTTGGAAGTGGAACCCTCA 374 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| || ||||| || |||| |||||| Sbjct 373 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGATAAAGAGGGGATTCCTCCGGATCAA 314 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || || | ||| || ||||||||||| || ||| | | || || ||| Sbjct 313 CAGCGTCTGATCTTTGCCGGAAAACAATTGGAGGACGGCCGTACTCTCTCGGACTACAAT 254 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||| || || || | || |||||||||||||| || Sbjct 253 ATTCAAAAGGAATCGACTCTTCACCTCGTCTTGCGTCTGCGCGGAGG 207 >seq14450 Length=5806 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||||||||| || || || | || || || ||||| || ||||| |||||| Sbjct 5471 AAAATGCAAATTTTCGTTAAGACATTAACGGGAAAGACCATCACTTTGGAAGTGGAACCG 5412 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||| | ||| | || || || || || ||||| || ||||| ||| Sbjct 5411 TCTGATACCATTGAGAATGTTAAGGCGAAGATACAGGATAAAGAGGGAATTCCCCCGGAT 5352 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 ||||| || || |||| ||||| |||||||||||||| ||| || |||||| Sbjct 5351 CAACAGAGACTCATTTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTGAGTGATTAT 5292 Query 111364 AATATACAAAAAG 111376 ||||||||||||| Sbjct 5291 AATATACAAAAAG 5279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422315873045800