Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq21107 174 3e-38 seq17817 123 5e-23 seq68991 113 8e-20 seq21020 96.9 6e-15 seq9998 96.9 6e-15 >seq21107 Length=15695 Score = 174 bits (192), Expect = 3e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || || || ||||| || || ||||| |||||||| ||||||||||| Sbjct 14786 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGAC 14727 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| | || ||||||||||| || | || || || ||||| ||| Sbjct 14726 AGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGA 14667 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || || ||||||||||| || ||||| || |||||||| || ||| | ||| || Sbjct 14666 ATACCCTCTTTGTCTTGAATTTTGGCCTTTACATTTTCGATGGTATC-GCTCGGTTCAAC 14608 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || |||||||| || ||||| || ||||| || || ||||| Sbjct 14607 TTCCAATGTAATGGTTTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||||||| || || || || |||||||| || || || |||||| | Sbjct 14169 CCTCCCCTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTG 14110 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| || || || || || || || ||||| || ||||| ||||| || || ||| Sbjct 14109 AGAGTCCGTCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGA 14050 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || || || |||||||| ||||| || ||| ||||| || | | ||| ||| Sbjct 14049 ATTCCCTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCACT 13990 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 13989 TCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| |||| |||||| || || || |||||||| || || || |||||| | Sbjct 14397 CCCCCGCGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTG 14338 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| || || || || || ||||| || || || | | || || ||||| ||| Sbjct 14337 AGAGTCCGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGA 14278 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || |||||||||||||| ||||| ||| ||||| || || | | ||| || Sbjct 14277 ATTCCCTCTTTGTCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACC 14218 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| ||||| ||||| ||||||||||| || ||||| Sbjct 14217 TCCAATGTGATGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 Score = 165 bits (182), Expect = 1e-35 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || || || ||||| || || ||||| ||||| || ||||||||||| Sbjct 13941 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGAC 13882 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| | || || |||||||| || | || || || ||||| ||| Sbjct 13881 AGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGA 13822 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || || || |||||||| || ||||| || ||| ||||| || ||| | || || Sbjct 13821 ATACCCTCTTTATCTTGAATTTTGGCCTTAACATTCTCAATGGTATC-GCTCGGCTCAAC 13763 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || |||||||| || ||||| ||||||||||| || ||||| Sbjct 13762 TTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 161 bits (178), Expect = 2e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||||| | ||||| || || || |||||||| || || ||||||||||| Sbjct 13713 CCTCCCCTGAGGCGAAGAACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAA 13654 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| || ||||| || || ||||| ||||| |||||||| ||||| || || ||| Sbjct 13653 AGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGA 13594 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| || ||||| ||||| || ||||| || || | | ||| ||| Sbjct 13593 ATCCCTTCTTTGTCCTGTATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCCACT 13534 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 ||||| ||||| ||||| || || | || || || || || |||||| ||| Sbjct 13533 TCCAAAGTGATCGTTTTACCGGTTAATGTTTTCACAAAGATTTGCATTTTGC 13482 Score = 159 bits (176), Expect = 6e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 |||| |||||||| || ||||| || | ||| || || || || ||||| || ||||| Sbjct 15020 TAATAACCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAG 14961 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || ||||| || | || || ||||| || || ||||| || || || | || || || Sbjct 14960 TCCGAGAGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCC 14901 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || ||||| || || || |||||||| || || || ||| |||||||| || | | | Sbjct 14900 GGAGGAATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGT 14841 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| ||||||||||| || ||||| ||||||||||| |||||||| Sbjct 14840 TCCACCTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 >seq17817 Length=30685 Score = 123 bits (136), Expect = 5e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||| || ||||||||||| || |||| || ||||| || || ||||| || || | Sbjct 813 CTTTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAA 754 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 ||||||| ||||| || || ||||| ||||| ||||| || ||||| || || || || Sbjct 753 TGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCT 694 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 | || || || | ||| || || || || ||||| |||||||| | || || || | Sbjct 693 CTATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAA 634 Query 68452 ATATCTGCATT 68462 | || |||||| Sbjct 633 AGATTTGCATT 623 >seq68991 Length=328 Score = 113 bits (124), Expect = 8e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || || ||||| || || || ||||| ||||| ||||||||||| | Sbjct 173 CCCCCGCGGAGACGTAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCACTG 232 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| || || |||||||| || || || | ||||| || || ||| Sbjct 233 AGTGTACGTCCATCTTCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGGGGA 292 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 || || || || |||||||| || || ||||| Sbjct 293 ATACCCTCTTTATCTTGAATTTTAGCTTTGAC 324 >seq21020 Length=2817 Score = 96.9 bits (106), Expect = 6e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||| || || || || |||| ||| || || ||||||||||| || |||| | | || Sbjct 2622 TACTAAATGGAGAGTCGACTTTTTCTGAATATTATAATCGGAAAGAGTCCATCTGTTCTC 2681 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 || || | ||| |||| ||||| | ||||| || || ||||| ||||| ||||| || Sbjct 2682 CAATTGTTCCCCATCGAAGGTGAGTTTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTG 2741 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||| || |||| || || | | | | |||||||| ||||| ||||| Sbjct 2742 TATCTTCGCCTTTACATTTCCGATCGTATCCGACGGTACAACTTCCAAAGTGATCGTTTT 2801 Query 68432 TCCCGT 68437 || || Sbjct 2802 ACCGGT 2807 >seq9998 Length=203 Score = 96.9 bits (106), Expect = 6e-15 Identities = 138/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 268424 ATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCA 268483 || ||||| || || | |||||||| ||||| || ||||| | ||||||| ||| Sbjct 199 ATACCGTTACAGGCATAGATGCCATAAGCCTCGCGATAGTTAATCGTGATCCAGTAGGCA 140 Query 268484 AACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGG 268543 |||| ||||| || || || || |||||||| || ||||| || ||||| || Sbjct 139 TACATTTTTGCTACAGCATAGGGGCTACGTGGATAAAACGGCGTTGTTTCTTTTTGCGGT 80 Query 268544 ATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTT 268603 |||||| | ||| ||| | || || || || |||||||||||||| ||| |||| Sbjct 79 ATTTCTTGAACTAAACCATAAAGTTCAGATGTGGATGCTTGGTAGAAACGAGTTTTTTTC 20 Query 268604 TCGAGACCGCAGA 268616 || ||||| |||| Sbjct 19 TCCAGACC-CAGA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920004388194280