Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq32426 105 5e-18 seq21107 102 6e-17 >seq32426 Length=2656 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||||||||| | |||||| | | |||||||| || || ||||| |||| || || Sbjct 433 ATGCAAATATTCGTGAAAACACTCATCGGCAAAACTATCACTTTGGAAGTGGAACCCTCA 374 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| ||||||||||| | ||| | ||| Sbjct 373 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGATAAAGAGGGGATTCCTCCGGATCAA 314 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | || |||||||| || |||||| | || || ||| | | || |||||| Sbjct 313 CAGCGTCTGATCTTTGCCGGAAAACAATTGGAGGACGGCCGTACTCTCTCGGACTACAAT 254 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTA 22066 ||||| |||||||| |||||||| | || || ||| | || ||||| ||||| Sbjct 253 ATTCAAAAGGAATCGACTCTTCACCTCGTCTTGCGTCTGCGCGGAGGTTATTA 201 >seq21107 Length=15695 Score = 102 bits (112), Expect = 6e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 21829 GCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAG 21888 ||||||||||||| ||| | ||||||||||| || ||||| || || ||||| |||| Sbjct 13482 GCAAAATGCAAATCTTTGTGAAAACATTAACCGGTAAAACGATCACTTTGGAAGTGGAAC 13541 Query 21889 CCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAA 21948 | | || ||| | | || | ||| || || || ||||| || | || Sbjct 13542 CGTCGGATACGATCGAAAATGTAAAGGCGAAGATACAGGACAAAGAAGGGATTCCCCCGG 13601 Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 | ||||||||||| ||||| || || |||||| | ||||| | ||| | |||||| Sbjct 13602 ATCAACAGAGACTCATCTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGATT 13661 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 | ||||||||||| || || ||||| ||| |||| Sbjct 13662 ATAATATTCAGAAAGAGTCGACTCTCCATTTGGT 13695 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || |||| || | || ||||||||||| || ||||| |||| || | Sbjct 13943 ATGCAGATCTTCGTTAAGACTCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCCTCC 14002 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| || ||| ||||||||||| | || | ||| Sbjct 14003 GATACCATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAGGGAATTCCCCCGGATCAA 14062 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||| || || || |||||| | || || | ||| | |||||||||| Sbjct 14063 CAGAGACTTATTTTCGCGGGAAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAAT 14122 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || || ||||| ||| | ||||| ||| | | ||||| Sbjct 14123 ATTCAGAAAGAGTCGACTCTCCATTTAGTATTGCGTCTCAGGGGAGG 14169 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || | || |||||||||||||| ||||| || |||| Sbjct 13715 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACCATTACATTGGAAGTTGA-GCCGAG 13773 Query 21894 -GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| |||||| |||||||||||| | || | || Sbjct 13774 CGATACCATTGAGAATGTTAAGGCCAAAATTCAAGATAAAGAGGGTATTCCCCCCGATCA 13833 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| || | || || || || |||||||| |||||| | || || ||||||| || Sbjct 13834 GCAGCGATTGATTTTCGCCGGAAAACAACTCGAAGATGGACGTACACTGTCCGATTATAA 13893 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||| ||||| || ||||| || | || |||||| | || || || Sbjct 13894 TATTCAAAAGGAGTCGACTCTCCACTTAGTCTTACGTCTCCGCGGGGG 13941 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | |||||| | || || ||||||||||| ||||| ||| | Sbjct 14560 ATGCAAATCTTTGTCAAAACACTCACCGGTAAAACCATTACATTGGAAGTTGAACCGAGC 14619 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| || ||||||||| | || | || Sbjct 14620 GATACCATCGAAAATGTAAAGGCCAAAATTCAAGACAAAGAGGGTATTCCCCCCGATCAG 14679 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| || | || || || || |||||||| |||||| | || || ||||||| ||| Sbjct 14680 CAGCGATTGATTTTCGCCGGGAAACAACTCGAAGATGGACGTACACTGTCCGATTATAAT 14739 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||| || ||||| || | || |||||| | || || || Sbjct 14740 ATCCAAAAGGAGTCGACTCTCCACTTAGTCTTACGTCTCCGCGGGGG 14786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357511789833946