Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq21107 127 2e-24 seq32426 109 5e-19 seq68991 102 7e-17 >seq21107 Length=15695 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | ||| |||||||| | || || ||||| ||||| ||||||||| Sbjct 14172 ATACCTCCCCTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCG 14113 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||| || || || | |||||| || ||| | || || | |||||| ||||| Sbjct 14112 CTGAGAGTCCGTCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGG 14053 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || ||||| || |||||| || | | |||| ||| |||| || ||| Sbjct 14052 GGAATTCCCTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCC 13993 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||||||||| ||||| || || || |||||||| Sbjct 13992 ACTTCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | || || ||||| ||||| || |||||| | ||| || ||||| Sbjct 13696 AACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCTTC 13637 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | |||||| || ||| ||||||| | |||||| ||||| ||||| ||||||||||| Sbjct 13636 CAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTG 13577 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| |||| | ||| | || || | | ||| || |||| || | |||||| Sbjct 13576 TATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCCACTTCCAAAGTGATCGTTTT 13517 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| | ||||| ||||| || ||||| Sbjct 13516 ACCGGTTAATGTTTTCACAAAGATTTGCAT 13487 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || || | ||| || | || | || ||||| |||||||| || || || Sbjct 15015 ACCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGA 14956 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| || || | |||||| || || |||| |||||||| || |||||||| Sbjct 14955 GAGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGG 14896 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| || ||||| || ||| || ||| | | ||| | ||| || | || ||| || Sbjct 14895 AATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCAC 14836 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | ||||| ||||| ||||| || || || |||||||| Sbjct 14835 CTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || ||||| || | || || || |||||||| || |||||| Sbjct 13944 ATCCCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCG 13885 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| |||||| |||||||| || ||| | || | ||||| || || || Sbjct 13884 GACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGG 13825 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTC 114331 ||||| || ||||| || ||| ||| | ||| | | |||| ||| ||| | | || Sbjct 13824 GGAATACCCTCTTTATCTTGAAT-TTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTC 13766 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||||||||| ||||| || || || || ||||| Sbjct 13765 AACTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||| || || ||||| | || || ||||| ||||| ||||||||| Sbjct 14400 ATCCCCCCGCGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCG 14341 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||| || || || | |||||| || || | || | ||||| || || || Sbjct 14340 CTGAGAGTCCGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGG 14281 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || |||||||| |||||| || | | ||| | || || | | ||| Sbjct 14280 GGAATTCCCTCTTTGTCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCC 14221 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || ||||| || || || || || || ||||| Sbjct 14220 ACCTCCAATGTGATGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 >seq32426 Length=2656 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || || | ||| || | || | || ||||| |||||||| ||||| || Sbjct 206 ACCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGA 265 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| || || | |||||| || || |||| ||||||||||| |||||||| Sbjct 266 GAGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGG 325 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| || ||||| || ||| || ||| | | |||| |||||| | || ||| || Sbjct 326 AATCCCCTCTTTATCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCAC 385 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | ||||||||| | || ||||| || || || ||||| Sbjct 386 TTCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 >seq68991 Length=328 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 ||||| |||||| | |||||| || || |||| ||||||||||| ||||| ||||| Sbjct 8 GTACGTCCATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATC 67 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 ||||||||||| || || ||| | | ||| | || |||| || |||||| ||| Sbjct 68 CCTTCTTTGTCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCC 127 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | ||||| ||||| |||||||| || || || ||||| Sbjct 128 AATGTAATGGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || || ||||| | || || || ||||||||||| ||||| Sbjct 170 ATCCCCCCGCGGAGACGTAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCA 229 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||||| |||||| | |||||| || || |||| ||||||||||| ||||| Sbjct 230 CTGAGTGTACGTCCATCTTCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGG 289 Query 114273 GGAATGCCTTCTTTGTC 114289 ||||| || ||||| || Sbjct 290 GGAATACCCTCTTTATC 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419415246625788