Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq21107 91.5 1e-13 seq32426 86.0 5e-12 >seq21107 Length=15695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||| |||| ||| || || ||| |||||||| |||||||| || | ||| Sbjct 14388 AGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATC-GCTGAGAGTCCG 14330 Query 33970 TC-GTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 || ||| |||||||| || || ||||| |||| ||||||||||| || | | ||| Sbjct 14329 TCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTC 14270 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| ||| || ||||| | | | |||||| | ||| || | || Sbjct 14269 TTTGTCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAATGT 14210 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || |||||||| ||||| || || ||||||||||| Sbjct 14209 GATGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 >seq32426 Length=2656 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 ||||||| | ||| |||| || || ||||| || ||||| ||||| ||||| || | Sbjct 205 AACCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCG 264 Query 33959 CCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || |||| |||||||| || |||||||| ||||| ||||| |||||| | Sbjct 265 AGAGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAG 324 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA---TCAGTAGATT 34075 | | | |||||| || |||||| |||| || | || || | || | | || Sbjct 325 GAATCCCCTCTTTATCTTGAATTTTG-GCTT--TGACATTCTCAATGGTGTCTGAGGGTT 381 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| | || || ||||| ||| | ||||||||||| || |||||||| Sbjct 382 CCACTTCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396382739480098