Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq21107 170 5e-37 seq68991 143 6e-29 seq32426 131 4e-25 seq14450 127 5e-24 seq17817 125 2e-23 >seq21107 Length=15695 Score = 170 bits (188), Expect = 5e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | | ||||| |||| || ||| ||||| ||||||||||| | | Sbjct 15014 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAG 14955 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| |||||||||||||| || |||||||||||||| ||| || Sbjct 14954 AGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGA 14895 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || |||||||| || |||||||||||||||||||| || | ||| | ||| || Sbjct 14894 ATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACC 14835 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || ||||| |||||||||||||| |||||||| Sbjct 14834 TCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| |||||||| |||| || || ||||| ||||| | ||||||||| ||||| Sbjct 13905 TCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAA 13846 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| ||| || ||| || || |||||||| || ||||| || || || Sbjct 13845 ATCAATCGCTGCTGA---TCGGGGGGAATACCCTCTTTATCTTGAATTTTGGCCTTAACA 13789 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||||||| || ||||| | || || || || ||||| ||||||||| Sbjct 13788 TTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTG 13729 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 13728 ACGAAGATTTGCAT 13715 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||| || ||| ||| || |||||||| || ||||||||||| ||||| Sbjct 14133 TCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCCTCCAATTGTTTTCCCGCGAAA 14074 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||||||| || ||| ||||| ||||||||||| || || || || || Sbjct 14073 ATAAGTCTCTGTTGA---TCCGGGGGAATTCCCTCTTTATCCTGAATCTTGGCCTTAACA 14017 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | ||| ||||| | ||||| || || ||||| |||||||| Sbjct 14016 TTCTCAATGGTATCGGAGGGTTCCACTTCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTA 13957 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 13956 ACGAAGATCTGCAT 13943 Score = 132 bits (146), Expect = 1e-25 Identities = 149/198 (75%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || |||||||| |||| || || ||||||||||| |||||||| || |||||| Sbjct 13677 TCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAG 13618 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | |||||| ||| ||| || |||||||| ||||| || ||||| || || Sbjct 13617 ATGAGTCTCTGTTG---ATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCCTTTACA 13561 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | ||| || ||| ||||| | |||||||| || ||||| | || || Sbjct 13560 TTTTCGATCGTATCCGACGGTTCCACTTCCAAAGTGATCGTTTTACCGGTTAATGTTTTC 13501 Query 288460 ACGAATATCTGCATTATG 288477 || || || |||||| || Sbjct 13500 ACAAAGATTTGCATTTTG 13483 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| |||| ||||| | ||| | || ||||| || ||||| || ||| | Sbjct 14397 CCCCCGCGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTG 14338 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || |||||||| || || || |||| ||||| ||| || ||| Sbjct 14337 AGAGTCCGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGA---TCGGGG 14281 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || || || || || || |||||||| |||| ||| || ||| Sbjct 14280 GGAATTCCCTCTTTGTCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCC 14221 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 14220 ACCTCCAATGTGATGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||||||||| |||| || || ||||| ||||| | |||||| || ||||| Sbjct 14750 TCCTTTTGGATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAAA 14691 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || ||| ||| || || ||||| || || ||||| || || || Sbjct 14690 ATCAATCGCTGCTG---ATCGGGGGGAATACCCTCTTTGTCTTGAATTTTGGCCTTTACA 14634 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | |||||||| ||| ||||| | || || || || ||||| || || ||| Sbjct 14633 TTTTCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGTTTTACCGGTGAGTGTTTTG 14574 Query 288460 ACGAATATCTGCAT 288473 || || || ||||| Sbjct 14573 ACAAAGATTTGCAT 14560 >seq68991 Length=328 Score = 143 bits (158), Expect = 6e-29 Identities = 135/171 (79%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || ||||| ||||| ||||||||||| || ||||||||||||||||| ||| || Sbjct 4 GAGTGTACGTCCATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTG---ATCCGG 60 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || |||||||| ||||| ||||||||||| || ||||| |||| |||| | ||| Sbjct 61 GGGAATCCCTTCTTTGTCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTC 120 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || || || ||||| ||||| || |||||||| ||||| Sbjct 121 GACTTCCAATGTAATGGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 Score = 93.3 bits (102), Expect = 1e-13 Identities = 116/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | | || | ||||| || || ||||| || ||||| || | Sbjct 173 CCCCCGCGGAGACGTAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCACTG 232 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| |||||||| || || ||||||||||||||||| ||| ||| Sbjct 233 AGTGTACGTCCATCTTCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTG---ATCCGGG 289 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || |||||||| || ||||| ||||| || || Sbjct 290 GGAATACCCTCTTTATCTTGAATTTTAGCTTTGACATT 327 >seq32426 Length=2656 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | | ||||| |||| || ||| ||||| ||||| ||||| | | Sbjct 207 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAG 266 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || ||||||||||| || |||||||||||||||||| || Sbjct 267 AGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGA 326 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || |||||||| || ||||| ||||| || || || || | || | ||| ||| Sbjct 327 ATCCCCTCTTTATCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCACT 386 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || ||| | || || || |||||||| ||||| Sbjct 387 TCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 >seq14450 Length=5806 Score = 127 bits (140), Expect = 5e-24 Identities = 150/202 (74%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||| |||||||| || || || ||||||||||| |||||||| || ||||| | Sbjct 5279 CTTTTTGTATATTATAATCACTCAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAAA 5338 Query 288344 TCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 | || | |||||| ||| ||| ||||| ||||||||||| || ||||| || || | Sbjct 5339 TGAGTCTCTGTTG---ATCCGGGGGAATTCCCTCTTTATCCTGTATCTTCGCCTTAACAT 5395 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || | ||| || ||| ||||| | ||||| ||||| || || | ||||| | Sbjct 5396 TCTCAATGGTATCAGACGGTTCCACTTCCAAAGTGATGGTCTTTCCCGTTAATGTCTTAA 5455 Query 288461 CGAATATCTGCATTATGTTATT 288482 |||| || |||||| | |||| Sbjct 5456 CGAAAATTTGCATTTTCGTATT 5477 >seq17817 Length=30685 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||| |||||||| |||| || || ||||||||||| |||||||| || || || | Sbjct 813 CTTTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAA 754 Query 288344 TCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 | || | |||||| ||| ||| || |||||||| ||||| || |||||||| || | Sbjct 753 TGAGTCTCTGTTG---ATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACAT 697 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | ||||| | ||| |||| ||| || || | || || ||||| || || | || || | Sbjct 696 TCTCTATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCA 637 Query 288461 CGAATATCTGCATT 288474 | || || |||||| Sbjct 636 CAAAGATTTGCATT 623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177531608589422