Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq66076 91.5 3e-13 >seq66076 Length=3687 Score = 91.5 bits (100), Expect = 3e-13 Identities = 210/313 (67%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 297236 TTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATT 297295 || || ||||| ||| | || || ||| |||| || || || ||| || || || || Sbjct 620 TTCTCAACGATATCTCTGGGGTTATAATTAGGAATTTTGGTACTCCATCCCGTGCCTATC 679 Query 297296 CCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATC 297355 || | |||||||| || | ||||||||| ||||||||||| || ||||| || Sbjct 680 CCTTCAGCCCCATTCACAAGTACCATCGGAATAATCGGCACATAATATTCGGGTTCAATT 739 Query 297356 TTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCG-TATCGACGAAA-ACCT 297413 || | |||||||| || | |||| || ||| |||| | || |||| | | Sbjct 740 TTTAAATTATCATCATAAAGGAAATTCAATAGCGGATCATCCGCCACCG--GAAAGATTT 797 Query 297414 GTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCAC 297473 || | | |||| | || |||| || ||||| || | ||||||| ||| ||||| | Sbjct 798 TTCTCGCCAAAGGGCTGAGCATTGTAAATATATAACGGGGACTCGCGGCATCTTTACCCC 857 Query 297474 CCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGA 297533 |||| | | | ||||||||| || ||| || || | |||||| || |||| Sbjct 858 CCTGAAGACGTGTACCGAACTGACCGATCGGTTGTAATAGATTAACGTTATTACTCCCGA 917 Query 297534 CATAATCCTGTGC 297546 | |||| |||||| Sbjct 918 CGTAATTCTGTGC 930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1100895364338150