Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq54310 111 2e-19 seq21107 98.7 1e-15 seq17817 87.8 2e-12 seq14450 86.0 7e-12 >seq54310 Length=4878 Score = 111 bits (122), Expect = 2e-19 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 3089 GAAAAATATGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 3148 Query 57057 CTCACCACTATACTACCGAGGATTGAATA 57085 || |||||||||||||||||||||| ||| Sbjct 3149 CTGACCACTATACTACCGAGGATTGCATA 3177 >seq21107 Length=15695 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||||||||| ||||| | ||| || || | || || || || || || ||||| Sbjct 13906 CTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAA 13847 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | ||||||||| |||| || | | ||| || | | ||| |||| | || | Sbjct 13846 AATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTAT-CTTGAATTTTGGCCTTAACAT 13788 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | || ||||||| || || || | || ||||||||||| || || ||||| | Sbjct 13787 TCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGA 13728 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 13727 CGAAGATTTGCAT 13715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| || | |||||| || ||||| | || ||| || |||||||||||||| Sbjct 14170 ACCTCCCCTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCT 14111 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||||| |||| || | || || || ||||| || |||| ||| || || | || Sbjct 14110 GAGAGTCCGTCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGG 14051 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||| || ||| ||| | || | || | || | | || ||| | ||||| Sbjct 14050 AATTCCCTCTTTATCC-TGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCA 13992 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||||||||| || || ||||| || ||||| ||||| Sbjct 13991 CTTCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| ||||| ||||| | ||| || || | || || || || || || ||||| Sbjct 14751 CTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAA 14692 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 || | ||||||||| |||| || | | ||| ||||| ||| |||| | || | Sbjct 14691 AATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTCT-TGAATTTTGGCCTTTACAT 14633 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||||||| ||| || || | || |||||||| || || || || || | Sbjct 14632 TTTCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGTTTTACCGGTGAGTGTTTTGA 14573 Query 42196 CAAAGATTTGCAT 42208 ||||||||||||| Sbjct 14572 CAAAGATTTGCAT 14560 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | || | |||||||| | || ||| || |||||||| ||||| | Sbjct 13713 CCTCCCCTGAGGCGAAGAACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAA 13654 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 |||||||| |||| || | || || || ||||| ||||||| ||| || || | || Sbjct 13653 AGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGA 13594 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | || |||||| || || || | | | | ||| || || |||||| Sbjct 13593 ATCCCTTCTTTGTCCTGTATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCCACT 13534 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | ||||| ||||| || |||| || || ||||||||||||||||| Sbjct 13533 TCCAAAGTGATCGTTTTACCGGTTAATGTTTTCACAAAGATTTGCATTTT 13484 >seq17817 Length=30685 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42021 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 42080 ||||| ||||| ||||| | |||||||| |||| || | || || || || || ||| Sbjct 811 TTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAATG 752 Query 42081 AGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC 42140 |||| ||| || || | || | | || |||||| || || ||| | || | Sbjct 751 AGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCTCT 692 Query 42141 ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAG 42200 | ||| || |||| ||| || || | || ||||| || ||||||| || || |||||| Sbjct 691 ATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAAAG 632 Query 42201 ATTTGCATTTT 42211 ||||||||||| Sbjct 631 ATTTGCATTTT 621 >seq14450 Length=5806 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42021 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 42080 ||||| ||||| |||||| ||||||||| |||| || | || || || ||||| ||| Sbjct 5281 TTTTGTATATTATAATCACTCAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAAATG 5340 Query 42081 AGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC 42140 |||| ||| || || | || | | ||| || ||| || || || | || | Sbjct 5341 AGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGTATCTTCGCCTTAACATTCTCA 5400 Query 42141 ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAG 42200 | || || || |||||| || | |||||||| || ||||||| ||||| || || Sbjct 5401 ATGGTATCAGACGGTTCCACTTCCAAAGTGATGGTCTTTCCCGTTAATGTCTTAACGAAA 5460 Query 42201 ATTTGCATTTTC 42212 |||||||||||| Sbjct 5461 ATTTGCATTTTC 5472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542259128818160