Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq17817 105 7e-18 seq14450 105 7e-18 seq21107 104 2e-17 seq8365 86.0 6e-12 >seq17817 Length=30685 Score = 105 bits (116), Expect = 7e-18 Identities = 143/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 ||||||| || || ||||| | | || || ||||||| | || || || ||| ||| Sbjct 813 CTTTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAA 754 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 |||| | ||| || || || ||||| |||||||| || ||||| || |||||| || Sbjct 753 TGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCT 694 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | ||||||| | || || |||| || | |||||| || || || ||||| || | Sbjct 693 CTATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAA 634 Query 64434 AAATTTGCA-TTTTAATA 64450 | ||||||| |||||||| Sbjct 633 AGATTTGCATTTTTAATA 616 >seq14450 Length=5806 Score = 105 bits (116), Expect = 7e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 ||||||| || || ||||| | || || ||||||| | || || || || ||| Sbjct 5279 CTTTTTGTATATTATAATCACTCAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAAA 5338 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 |||| | ||| || || || |||||||| ||||| || ||||| || ||| ||| || Sbjct 5339 TGAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGTATCTTCGCCTTAACATTCT 5398 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | |||||| | |||||||| | ||| | |||||| || || || || || |||| Sbjct 5399 CAATGGTATCAGACGGTTCCACTTCCAAAGTGATGGTCTTTCCCGTTAATGTCTTAACGA 5458 Query 64434 AAATTTGCATTTT 64446 ||||||||||||| Sbjct 5459 AAATTTGCATTTT 5471 >seq21107 Length=15695 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | ||||| ||||| ||||| || ||||| | | || || |||| Sbjct 13699 AAGAACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTC 13640 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || || || | ||||| | ||| || || || ||||| |||||||| || Sbjct 13639 TTCCAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTC 13580 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACG 64408 ||||| || ||||||| || | ||||| || || |||||||| | ||| | Sbjct 13579 CTGTATCTTCGCCTTTACATTTTCGATCGTATC--CGACGGTTCCACTTCCAAAGTGATC 13522 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || ||||| || ||||| || || ||||||||||| Sbjct 13521 GTTTTACCGGTTAATGTTTTCACAAAGATTTGCATTTT 13484 >seq8365 Length=5311 Score = 86.0 bits (94), Expect = 6e-12 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 153667 TGCATTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACA 153726 || |||| || || || ||| || |||| || || ||||| || |||||||| |||| Sbjct 604 TGGATTTATCGACAGTGAATTGAATAGCATTTGCCGCGGGTTTCGTACGCAAATAGTACA 663 Query 153727 TGCCGGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCA-CGCTAGTTAATAACGCGAAA 153785 | || || || || || |||||| ||| | ||||| || | || | || | Sbjct 664 TCCCCGTCTTTAACCCCAATTTCCAGCCGTGAAAGTGCATCGAT-GTGATCTTTGCCATT 722 Query 153786 CTGGG--CTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGAT 153843 |||| ||||| ||| || ||||| ||| ||||| || || |||||||| ||||||| Sbjct 723 GTGGGTGCTGCGATATGAAT--GTTAAGCGATTGGCTTTGGTCAATGAAAGCCCCGCGAT 780 Query 153844 CGGCCGCCATGTCAATCAAGTTTTTACTG-CTCATTTCCCACACAGTTTTGTA 153895 |||| | ||| ||||| || | | ||| |||||||| || |||||||| Sbjct 781 CGGCAGACATTTCAAT-AACTGTACGCTGTGATATTTCCCATACTGTTTTGTA 832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498767617343560