Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq8365 163 3e-35 seq21107 116 4e-21 seq32426 107 2e-18 seq68991 91.5 1e-13 >seq8365 Length=5311 Score = 163 bits (180), Expect = 3e-35 Identities = 986/1563 (63%), Gaps = 49/1563 (3%) Strand=Plus/Plus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 || || || | |||||| || || | ||| |||| || |||||| ||| || || | Sbjct 954 TGATTAACGATTTGAAATTCTCCGGACAAAACTCTTCGTGAATATATATTACTCGTATAC 1013 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 | ||||| || |||||||| || | || || || || | ||| |||||||| || Sbjct 1014 GCTTCAACAGACTCGTTATTTCCCAAAATCTGTGCTGTCGATGCCGTCGGCATCGGTGCT 1073 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | ||||| | |||| | |||||| | || | ||||||| | ||||| | Sbjct 1074 AACAACAGACTGTTCCTGAGTCCGTGCATTTTGATCTTTTCCTTCAGTTCAGTCCAATTC 1133 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 || || | | ||||||| ||||||||||| ||||| | | ||| | ||||||| Sbjct 1134 CATAGGTCTGTCGGTGTCTTATTCCACATGTCATACTGCAGTATCCCTTTAGAGGCGGGA 1193 Query 153267 CTGCCGGCAAACGTACT-GTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAG 153325 || || | | ||| ||| || | |||| |||| ||| || || | ||||| Sbjct 1194 GAACCCTCATATG-ACTCGTAAGGACCATACTGTTGTGCCAATTCACAACTCGATTCGAG 1252 Query 153326 CGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTC 153385 || || | |||| || || ||||| |||||||| |||||| ||||| Sbjct 1253 AGCCCCGAAATATAATGTCTCAAATATTTGAATATTGAGACGTTTCGCTTCGGGACTCTC 1312 Query 153386 GTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGG 153445 |||| |||| || | || || ||||| | ||||| | || | ||| || || Sbjct 1313 AAACGGGTAACGCATGAGAATGAACGCATCGGCTAATCCCTGAACTCCAATGCCAATCGG 1372 Query 153446 TCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAAT 153505 || | | | | ||| ||| || | | |||||| | ||| ||||||||| Sbjct 1373 ACGGTTCCTTTTATTGGAGCGTTCCGTTTCAGGAACGGGATAATAATTAATATCGATAAT 1432 Query 153506 TTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGT 153565 || || | ||| || | ||||||| | |||| || || |||| ||| |||| Sbjct 1433 CTTATTTAAGTTTCGGGTAATGACTTTAGCGACATCCTTGAGCTTTGCGAAGTCAAAGGT 1492 Query 153566 ---CATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622 ||| | | || ||| | ||||| | || | || |||| |||||| ||||| Sbjct 1493 GCGGGTTTTGGTGTCG---ACGAACCGATTGAGTGCGACTGAAGCCAAATTACACACGGC 1549 Query 153623 CGTCTCTTCGGCGTCGCTG--TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATG 153680 | || ||| | | || || | ||||| || | ||| || || |||||| ||| Sbjct 1550 AATTTCGTCG--GGAGATGAATATTCAACGATTTCAGTGCATAGATTTGAGCATTTAATG 1607 Query 153681 ACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 153740 || | |||||| |||||| || || ||||| |||||| | | |||||||||| Sbjct 1608 GTTCCGAGATTTTGTTGATTGGACTTTCGGTTGCAATGGTCTTTATAAACCATGTACGGT 1667 Query 153741 CCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC 153797 ||| ||||||| || | ||||| || | ||| || ||| || || || Sbjct 1668 GTGCCCGTCTCGATCTGAGCCTCGACAATGGCATACC---ACAATGACTGAGCCCGAAC- 1723 Query 153798 CGCTGCCGATAGCGGCCC---TCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCG 153854 ||| || | | | || || |||||| ||| || | ||||||| | | Sbjct 1724 --CTGACGTTTGTATTTCTTTTCTCTTTCGTATTTCTCATATAAATCCTCAAACGCCTGA 1781 Query 153855 CCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCG 153914 || | ||| | || || || | || |||||||||| ||||| || | ||| Sbjct 1782 CCCCACGTGTCATGTAAACCCGGGCATTCGTGTGGACACATCAATGACCATATCCCATCG 1841 Query 153915 GCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCC 153974 | | || ||| |||||||| ||| || | ||| || | || | | ||| || || Sbjct 1842 GATTCAACACGTTTCATGAACAAATCGGGAATCCAAAGGCCATAGAACAAGTCACGTGCA 1901 Query 153975 TTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCA---CGCTATAGATGTCGGCG 154031 ||||| | ||| |||| | || | ||| | || ||| | ||||| Sbjct 1902 CGTATTTCCTCAGAACCCGTGTTCTTCCTAAGGTCGAGGAATTCG-AATACA--TCGGCA 1958 Query 154032 TGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG---CTTTCCGCCCTGATCGACG 154088 ||||| ||||| ||||| || || | || || ||| || || |||||||||||| Sbjct 1959 TGCCACGGTTCGATGTAAACTGCGAAAGCGCCGGGACGTTTGTTCCCCCCCTGATCGACG 2018 Query 154089 TGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTG 154148 | || | |||||||||| ||||||| ||| || ||| || ||| |||| || Sbjct 2019 TATCGGGCAGTATTGTTGAACACGCGCAACATCGGGACCAATCCATTTGATATGCCATTC 2078 Query 154149 GT---CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCG 154205 || || | || | |||| || | | ||| || || | || || || Sbjct 2079 GTACCCGCA---ATATAAGTGCCCTTAGCCCTTATGCAATGAACATTTATTCCGATACCA 2135 Query 154206 CCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTA 154265 ||| | || |||||| ||||||| | || || ||| || || || || || Sbjct 2136 CCGGCAGCTTTCGATATGACAGCGCATTGTTTGAGTGTGTCGTAAATCCCCTCAATACTG 2195 Query 154266 TCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGC-GCGTTCCCGCCGA 154324 || || | | | |||||||| ||| ||| || ||| | ||||| || Sbjct 2196 TCATCTTTCATGGTCAATAAGAAACAACTGGACAATTGTGG-GTGCGGAGTTCCGGCATT 2254 Query 154325 AAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGAT 154384 || || || || || || |||||| | || | ||| | ||||| || || Sbjct 2255 GAACAGTGTCGGTGATGCATGAGTAAACCATCGTTCGGACATGAGATTATACGTCTCAAT 2314 Query 154385 GGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGG 154444 ||| | || || |||| ||||| || || | ||||| |||||||||||||||||||| Sbjct 2315 GGCAGCGTCAATGTCATTTCCGTGTATCCCCACAGCGACACGCATGAGCATGTGCTGCGG 2374 Query 154445 ACGTTCGGCGACT---CTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTA 154501 ||||| |||||| |||||| ||||| | | |||| || || |||||| | Sbjct 2375 TCGTTCCGCGACTTTCCTATTG---ATCTTAATTAAATATGACCGCTCAAGTGTTTTGAA 2431 Query 154502 ACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAG-CGTCGCGG 154560 ||||||||| ||||| | | |||| | |||| | |||||| | || ||| ||| ||| Sbjct 2432 ACCGAAATAATTGTAATGATAATCGCGATCATAAATGATGGCGGAATTGAGTCGT-TCGG 2490 Query 154561 CAT 154563 ||| Sbjct 2491 CAT 2493 >seq21107 Length=15695 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||||| || | || | | || ||||||||||| || ||||| Sbjct 15014 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAG 14955 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||| | |||||| |||| | |||| |||||||| || |||||||| Sbjct 14954 AGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGA 14895 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || ||||| || ||| |||| | ||| | | ||| | ||| || | | ||||| Sbjct 14894 ATCCCCTCTTTATC-TTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCAC 14836 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | |||||||| || ||||| || || || |||||||| Sbjct 14835 CTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || ||||| || | | ||||||||||| || || || ||| | Sbjct 14786 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGAC 14727 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || ||||||||||| |||| | || | ||||| || || || || Sbjct 14726 AGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGA 14667 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| |||||||| ||| |||| | |||| | ||| | ||| ||| ||| || || Sbjct 14666 ATACCCTCTTTGTC-TTGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAAC 14608 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || || ||||| ||||| || ||||| Sbjct 14607 TTCCAATGTAATGGTTTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || ||||| || | | |||||||||||||| || || ||| | Sbjct 13941 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGAC 13882 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || ||||||||||| |||| | || | ||||| || || || || Sbjct 13881 AGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGA 13822 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| ||||| || ||| |||| | |||| | || | ||| ||| ||| ||| || Sbjct 13821 ATACCCTCTTTATC-TTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAAC 13763 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || ||||| || || || || ||||| Sbjct 13762 TTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 >seq32426 Length=2656 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||||| || | || | | || ||||||||||| |||||||| Sbjct 207 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAG 266 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||| | |||||| |||| | |||| ||||||||||| |||||||| Sbjct 267 AGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGA 326 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || ||||| || ||| |||| | ||| | | || | |||||| | | ||||| Sbjct 327 ATCCCCTCTTTATC-TTGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCAC 385 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || | || ||||| || || || ||||| Sbjct 386 TTCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 ||| || || || | ||| || ||||| || | | |||||||||||||| || || | Sbjct 430 GCATCCCCCGCGGAGACGTAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATT 489 Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 | || ||||| || ||||||||||| ||||| |||| | ||||| || || || Sbjct 490 GGACAGTGTACGTCCATCTTCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGG 549 Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTC 138563 ||| ||||| |||||||| ||||| |||| | ||| | ||| ||| ||| ||| Sbjct 550 AGGAATACCCTCTTTGTCCTGTATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGCTC 609 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 || || | || | | |||||| || || ||||| Sbjct 610 AACTTCCAATGTAATAGCTTTACCGGTGAGTGTTTT 645 >seq68991 Length=328 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || ||||| | | ||||||||||||||||| || || || Sbjct 173 CCCCCGCGGAGACGTAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCACTG 232 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | |||||| |||| | |||| ||||||||||| ||||| || Sbjct 233 AGTGTACGTCCATCTTCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGGGGA 292 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT 138537 ||||| ||||| || ||| |||| | ||| Sbjct 293 ATACCCTCTTTATC-TTGAATTTTAGCTTT 321 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | |||||| |||| | |||| ||||||||||| ||||| || || ||||||||| Sbjct 17 TCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCTTTG 76 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||||| ||| | | ||| | || |||| | || || || | || | Sbjct 77 TCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATGTAATG 136 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||||| || |||||||| || || || ||||| Sbjct 137 GTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495391155527280