Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq21107 132 3e-26 seq68991 109 4e-19 >seq21107 Length=15695 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 ||| ||||| || || || || || ||||| || || |||||| || | | | || Sbjct 14772 TAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATC 14713 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| | |||||| || ||| | ||||| ||||| || ||| ||||| || || ||||| Sbjct 14712 TTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTC 14653 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||||||| |||||| |||| || |||||||| ||| || || || |||||||| Sbjct 14652 TTGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGT 14593 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||| || || ||||| ||||| |||||||| Sbjct 14592 TTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || || || ||||| || || ||||||||||||||| | | |||| || Sbjct 14379 ACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCCTCC 14320 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| || || | ||||| ||||| || ||| |||||||| || ||||| | Sbjct 14319 AATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTCTTTGTCTTGA 14260 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || |||| |||||||| ||| || || || || ||||| || Sbjct 14259 ATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAATGTGATGGTCTTT 14200 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || || ||||||||| Sbjct 14199 CCGGTGAGTGTCTTGACGAAGATTTGCATA 14170 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || |||||||| || || || ||||| || || ||||||||||||||| | | |||| Sbjct 14154 AATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCC 14095 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || ||| | || | | |||||| || |||||||| || || || Sbjct 14094 TCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCC 14035 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| ||| || ||| | || || |||||| ||| || || || || |||||| Sbjct 14034 TGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCACTTCCAAAGTGATGGTT 13975 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || || || ||||| Sbjct 13974 TTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 ||| ||||| || || || || || ||||| || || |||||| || | | | || Sbjct 13927 TAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATC 13868 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| | |||||| || ||| | ||||| ||||| || ||| ||||| || || || || Sbjct 13867 TTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATC 13808 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||||||| || ||| | || || |||||||| || || || || |||||||| Sbjct 13807 TTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGT 13748 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || ||||| || || || |||||||| Sbjct 13747 TTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || ||||| || || || || |||| | | |||| ||||||||| Sbjct 14990 TGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAGAGAGTACGGCCGTCCTCTAATTGT 14931 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | |||| |||||| || || ||||| || || || || |||||| Sbjct 14930 TTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCTTTATCTTGAATTTTC 14871 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| || |||| || ||||| ||| || || || || ||||||||||| || Sbjct 14870 GCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACCTCCAATGTGATGGTTTTACCGGTG 14811 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || || ||||| Sbjct 14810 AGAGTCTTGACGAAGATCTGCAT 14788 >seq68991 Length=328 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| |||||||| || || | |||| ||||||||| || ||||| ||||| ||| Sbjct 17 TCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCTTTG 76 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||||| ||| ||| |||| ||||||||| ||| || || || |||||| Sbjct 77 TCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATGTAATG 136 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| || |||||||| || || |||||||| Sbjct 137 GTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356780244183965