Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq32426 114 1e-20 seq21107 113 4e-20 >seq32426 Length=2656 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | || ||||| || || | || ||||| ||||||||||| |||| | Sbjct 433 TCCCCCGCGGAGACGTAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGA 492 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || ||| || || ||||| || | | ||||||||||||||||||||||||| Sbjct 493 CAGTGTACGTCCATCTTCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGG 552 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| |||||| ||||| ||| | | ||||| ||| || | ||| || Sbjct 553 AATACCCTCTTTGTCCTGTATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGCTCAAC 612 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTT 127098 ||| | || | | ||| ||||| || ||||| Sbjct 613 TTCCAATGTAATAGCTTTACCGGTGAGTGTTTT 645 >seq21107 Length=15695 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || || || || || | || ||||| ||||||||||| |||||| | Sbjct 13941 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGAC 13882 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || |||||||| ||| | |||||||||||||||||||| || Sbjct 13881 AGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGA 13822 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| || || ||||| ||| | | || | ||| || | ||| ||| Sbjct 13821 ATACCCTCTTTATCTTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACT 13762 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||||||||| ||||| || || || || ||||| Sbjct 13761 TCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || || || || || | || ||||| ||||| ||||| |||||| | Sbjct 14786 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGAC 14727 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || ||||| || ||| | |||||||||||||||||||| || Sbjct 14726 AGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGA 14667 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| ||||| ||||| ||| | | ||||| ||| || | || ||| Sbjct 14666 ATACCCTCTTTGTCTTGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAACT 14607 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| ||||| || ||||| ||||| || ||||| Sbjct 14606 TCCAATGTAATGGTTTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | ||||| |||||||| | || |||||||| |||||||||||||||| Sbjct 14397 CCCCCGCGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTG 14338 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||||| || || | ||||| |||||||||||||| || Sbjct 14337 AGAGTCCGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGA 14278 Query 127007 ATGCCCTCCTTGTC 127020 || ||||| ||||| Sbjct 14277 ATTCCCTCTTTGTC 14264 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| || ||||| | || |||||||| |||||||||||||||| | || || Sbjct 14157 CGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCG 14098 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | |||||||| ||| | || | || ||| ||||| || || || ||||| || Sbjct 14097 TCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTA 14038 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| || || ||| | | || | ||| || | || ||||| | || | Sbjct 14037 TCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCACTTCCAAAGTGATG 13978 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||||||| ||||| || || || |||||||| Sbjct 13977 GTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474666004851760