Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq8365 149 6e-31 seq21107 136 4e-27 seq32426 127 2e-24 seq68991 107 2e-18 >seq8365 Length=5311 Score = 149 bits (164), Expect = 6e-31 Identities = 922/1462 (63%), Gaps = 31/1462 (2%) Strand=Plus/Minus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAA 123293 ||| |||| || | ||| || | | || ||||||| ||||| || |||||| Sbjct 2050 ATGTTGCGCGTGTTCAACAATACTGCCCGATACGTCGATCAGGGGGGGAACAAACGTCCC 1991 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAAT-TT 123352 ||||| | || | || | ||||||||||| | ||||| | ||| || | | || Sbjct 1990 GGCGCTTTCGCAGTTTACATCGAACCGTGGCATGCCGATGTATTCGAATTCCTCGACCTT 1931 Query 123353 AAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGT 123412 | | | |||| ||| | || |||| || || || ||||| || | | ||| | Sbjct 1930 AGGAAG-AACACGGGTTCTGAGGAAATACGTGCACGTGACTTGTTCTATGGCCTTTGGAT 1872 Query 123413 ACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGA 123472 ||||||||||| ||| ||| || || ||| || | ||||| | |||||||| | Sbjct 1871 TCCCGATTTGTTCATGAAACGTGTTGAATCCGATGGGATATGGTCATTGATGTGTCCACA 1812 Query 123473 TCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATA 123532 || || || || ||| | || | |||||| || || || | | |||| Sbjct 1811 CGAATGCCCGGGTTTACATGACACGTGGGGTCAGGCGTTTGAGGATTTATATGAGAAATA 1752 Query 123533 CGAGCGCGAAGGCAAACAGGTTAGTCAGGTTCCGGCAC-GTGATTTGTTCAAATTTATTA 123591 ||| | ||| ||| | ||||||||| ||| | || ||| || | ||| Sbjct 1751 CGAAAGAGAAAAGAAATACAAACGTCAGGTTCGGGCTCAGTCATT-GTGGTATGCCATTG 1693 Query 123592 TCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGA 123651 |||| | || |||| || || || ||||||||| | || |||||| |||||| | | Sbjct 1692 TCGAGGCTCAGATCGAGACGGGCACACCGTACATGGTTTATAAAGACCATTGCAACCGAA 1633 Query 123652 AAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCG 123711 | ||||||| || | ||||| || ||||| ||||| ||| | ||||| | | Sbjct 1632 AGTCCAATCAACAAAATCTCGGAACCATTAAATGCTCAAATCTATGCACTGAAATCGTTG 1573 Query 123712 AATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGC-GTGAATC 123768 |||| || | | |||| || | |||||||||||||||||||| | | || | |||| Sbjct 1572 AATATTCATC--TCCCGACGAAATTGCCGTGTGTAATTTGGCTTC-AGTCGCACTCAATC 1516 Query 123769 GTTGCGTCG------AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAAC---AA 123819 | | ||||| ||| | || | ||| | ||| || |||||| | || | || Sbjct 1515 GGTTCGTCGACACCAAAACCCGCACCTTTGACTTCGCAAAGCTCAA--GGATGTCGCTAA 1458 Query 123820 AAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAG 123879 | | || | || || || || ||||||||| |||||| |||||| | ||| Sbjct 1457 AGTCATTACCCGA-AACTTAAATAAGATTATCGATATTAATTATTATCCCGTTCCTGAAA 1399 Query 123880 CGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACG 123939 || || ||| | || | ||| | || | || |||| || || ||||| | Sbjct 1398 CGGAACGCTCCAATAAAAGGAACCGTCCGATTGGCATTGGAGTTCAGGGATTAGCCGATG 1339 Query 123940 CGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAA 123999 |||| | | |||| |||| || || |||||| || || |||| |||| Sbjct 1338 CGTTCATTCTCATGCGTTACCCGTTTGAGAGTCCCGAAGCGAAACGTCTCAATATTCAAA 1279 Query 124000 TAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACG 124059 || || ||| | |||| ||| ||| | || |||| || ||| | || || | | Sbjct 1278 TATTTGAGACATTATATTTCGGGGCTCTCGAATCGAGTTGTGAATTGGCACAACAGTATG 1219 Query 124060 GCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGT 124119 | | ||||| || | ||| || || ||| || ||||||| ||||||| Sbjct 1218 GTCCTTACGAGTCATATGAGGGTTCTCCCGCCTCTAAAGGGATACTGCAGTATGACATGT 1159 Query 124120 GGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGC 124179 ||||| ||||||||| | | ||| | |||| | | || || || | || Sbjct 1158 GGAATAAGACACCGACAGACCTATGGAATTGGACTGAACTGAAGGAAAAGATCAAAATGC 1099 Query 124180 ACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTT 124239 |||| | | ||| |||||| | || |||||||||||| | || || || |||| Sbjct 1098 ACGGACTCAGGAACAGTCTGTTGTTAGCACCGATGCCGACGGCATCGACAGCACAGATTT 1039 Query 124240 TAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAG 124299 | ||||| ||||| || | || ||| || | ||| | || ||| |||| || Sbjct 1038 TGGGAAATAACGAGTCTGTTGAAGCGTATACGAGTAATATATATTCACGAAGAGTTTTGT 979 Query 124300 CCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTG-GTG-GCGTTAAATTT 124357 |||| || |||||| | | ||||||||| | || || ||| || ||| || ||| Sbjct 978 CCGGAGAATTTCAAATCGTTAATCATCATCTTTTGAGAGATTTGACTGAACGTGAACTTT 919 Query 124358 GTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCG-TGCAGCGCATCG 124416 | | |||| || | || ||||| ||| | || | || | || || | Sbjct 918 GGA--ATGATAATCTTAAGAATGAAATAATTTCTAATCACGG-ATCGATTCAATTGATTG 862 Query 124417 CTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAAC 124476 ||||| | | | ||| ||||||||||||| || |||||||| | | Sbjct 861 AGGGAATTCCCCAGGATTTGAAGGAACTGTACAAAACAGTATGGGAAATATCACAGCGTA 802 Query 124477 GATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACG 124536 | | ||||||||| | | ||| || || || | || || ||||| ||||| ||||| Sbjct 801 CAGTTATTGAAATGTCTGCCGATCGCGGGGCTTTCATTGACCAAAGCCAATCGCTTAACA 742 Query 124537 TGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCA 124596 | | | || | |||||| || || || || ||| | |||| |||| Sbjct 741 TTCATATCGCAGCACCCACAATGGCAAAGATCACATCGATGCACTTTCACGGCTGGAAAT 682 Query 124597 GCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAAT 124656 || | || ||||| ||||| || || | || ||||| ||||| |||| ||||||| Sbjct 681 TGGGGTTAAAGACGGGGATGTACTATTTGCGTACGAAACCCGCGGCAAATGCTATTCAAT 622 Query 124657 TTACCGTCGACAAATCTAAACT 124678 | || ||||| ||||| ||||| Sbjct 621 TCACTGTCGATAAATCCAAACT 600 >seq21107 Length=15695 Score = 136 bits (150), Expect = 4e-27 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | || |||| || || || || |||||||| |||||||||||| Sbjct 13944 ATCCCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCG 13885 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| || | | ||| || | ||||||||| ||| | |||||||| ||||| || | Sbjct 13884 --GACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGG 13827 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || ||||||||||||||||| || | || | ||| ||| | || Sbjct 13826 GGGGAATACCCTCTTTATCTTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCT 13767 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| | |||| ||||||||||| ||||| || || || ||||||||| Sbjct 13766 CAACTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCATC 13714 Score = 131 bits (144), Expect = 2e-25 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | || |||| || || || || ||||||||||||||||||||| Sbjct 14789 ATCCCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCG 14730 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| || | | ||| || | |||||| || ||| | |||||||| ||||| || | Sbjct 14729 --GACAGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGG 14672 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || ||||| ||||||||||| || | ||| | ||| ||| | | Sbjct 14671 GGGGAATACCCTCTTTGTCTTGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTT 14612 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| | |||| ||||| ||||| || ||||| ||||| ||||||||| Sbjct 14611 CAACTTCCAATGTAATGGTTTTACCGGTGAGTGTTTTGACAAAGATTTGCATC 14559 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | ||| |||| ||| || || || || || || ||||| |||||| Sbjct 14172 ATACCTCCCCTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCG 14113 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| || || |||||||||||||| ||| | || | || || || ||||| Sbjct 14112 CTGAGAGTCCGTCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGG 14053 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || |||||||| ||||| || || | || | ||| ||||| | || Sbjct 14052 GGAATTCCCTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCC 13993 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| | ||| | ||||||||||| ||||| || || || || |||||| Sbjct 13992 ACTTCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCATC 13942 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | ||| || || || || || ||||||||||| |||||||| || | Sbjct 15014 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAG 14955 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || ||||||||||| || | |||| || ||||| ||||| ||| Sbjct 14954 AGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGA 14895 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || ||||||||||||||||| ||| | ||| | ||| || || | || || Sbjct 14894 ATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACC 14835 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || | || | ||||| ||||| ||||| || || || || |||||| Sbjct 14834 TCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCATC 14787 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || | ||| || || || || || || |||||||||||| Sbjct 13716 ATCCCTCCCCTGAGGCGAAGAACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCG 13657 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||||||||||| || ||| | || | || || || ||||| Sbjct 13656 GAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGG 13597 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| || || || || || | ||| | || || || | || Sbjct 13596 GGAATCCCTTCTTTGTCCTGTATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCC 13537 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | |||||| ||||||| ||||| ||||| |||||||| Sbjct 13536 ACTTCCAAAGTGATCGTTTTACCGGTTAATGTTTTCACAAAGATTTGCAT 13487 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | || || | ||| || || || || || || ||||| |||||| Sbjct 14400 ATCCCCCCGCGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCG 14341 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| || || ||||||||||| || || | ||||| || ||||| || || Sbjct 14340 CTGAGAGTCCGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGG 14281 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| |||||||| || || | ||| | || || || | || Sbjct 14280 GGAATTCCCTCTTTGTCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCC 14221 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | || || ||||| || || || || || |||||||| Sbjct 14220 ACCTCCAATGTGATGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 >seq32426 Length=2656 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | ||| || || || || || ||||||||||| ||||| || || | Sbjct 207 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAG 266 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||||||||||||| || | |||| || || || ||||| ||| Sbjct 267 AGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGA 326 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || ||||||||||||||||| ||||| || | |||||| || | || ||| Sbjct 327 ATCCCCTCTTTATCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCACT 386 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || | ||| | ||||||||| | || ||||| || || ||||||||| Sbjct 387 TCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCATC 434 >seq68991 Length=328 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||||||||||||| || | |||| || || || ||||| ||||| |||||||| Sbjct 16 ATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCTTT 75 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || || ||||| ||||| ||| | || ||||| | |||||||| | |||| Sbjct 76 GTCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATGTAAT 135 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||| |||||||| || || ||||||||| Sbjct 136 GGTTTTACCGGTGAGAGTTTTCACGAATATTTGCATC 172 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | ||||| | ||| || || || |||||||| || |||||||| Sbjct 170 ATCCCCCCGCGGAGACGTAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCA 229 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| || ||| ||||||||||| || || | |||| || || || ||||| Sbjct 230 CTGAGTGTACGTCCATCTTCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGG 289 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGA 45264 ||||| || ||||||||||||||||| ||||| Sbjct 290 GGAATACCCTCTTTATCTTGAATTTTAGCTTTGA 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451209657532040