Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq21474 84.2 3e-11 >seq21474 Length=6928 Score = 84.2 bits (92), Expect = 3e-11 Identities = 232/344 (67%), Gaps = 14/344 (4%) Strand=Plus/Minus Query 127341 TGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCT---CAGAGTTCATAC 127397 |||| | |||||| | ||| || |||||||| ||| || || || ||||||||| Sbjct 6046 TGAGTAAACGATCAGCGACATATTCAATGTAT---GACTTCATCAGTACACAGTTCATAC 5990 Query 127398 CGATGAG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCC 127456 ||||||| | || || || || || | ||| ||| |||||| ||||||||| Sbjct 5989 CGATGAGTGCGAC-CGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACAGCTTCA 5931 Query 127457 CGTACGAT-GGCGTGAATAGTGTCCACCCCAGGTCTATT-GCGTAAAGTCTTGAAGAGT- 127513 || || | |||| | || || ||| ||| |||| || | || || |||||| Sbjct 5930 GTAACAATACGAGTGATTTGT-TCGACCGTTGGTTTATTAACGATATGT-TTAAAGAGTA 5873 Query 127514 TCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 127573 ||| || || || || || ||||| ||||| || || |||||||| |||| | Sbjct 5872 AACAC-GCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTCATTACTGAAGGTC 5814 Query 127574 AGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAG 127633 | || ||||| || || || ||||| | ||| || || | ||||| || ||| Sbjct 5813 AATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCGCTAAAG 5754 Query 127634 AAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA 127677 || || ||||| || | || ||||||| || ||| |||||||| Sbjct 5753 AATATACCCTCAACTGATGCAAACGCAACTAAACGTTCGGCAAA 5710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612430119090840