Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq8365 91.5 2e-13 >seq8365 Length=5311 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 || || || ||||| ||||| || || | || || | | | || ||||||||| || Sbjct 609 TTATCGACAGTGAATTGAATAGCATTTGCCGCGGGTTTCGTACGCAAATAGTACATCCCC 668 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGGG 203958 ||||||| ||| | ||| |||| | |||||| || | | ||||| || |||| Sbjct 669 GTCTTTAACCCCAATTTCCAGCCGTGAAAGTGCATCGATGTGATCTTTGC-CATTGTGGG 727 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018 | || || |||||||| || || ||||||||||| ||||||| | | ||||| || | Sbjct 728 TGCTGCGATATGAATGTTAAGCGATTGGCTTTGGTCAATGAAAGCCCCGCGATCGGCAGA 787 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 ||| | |||| || ||| || || ||||| || || ||| ||| Sbjct 788 CATTTCAATAACTGTACGCTGTGATATTTCCCATACTGTTTTGTACA 834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793759215591440