Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq21107 131 4e-25 seq68991 105 2e-17 seq32426 98.7 2e-15 >seq21107 Length=15695 Score = 131 bits (144), Expect = 4e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| ||||| |||||||| |||||||| | || ||||| | | ||| Sbjct 15008 CGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAGAGAGTA 14949 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || | || |||||||| ||||| ||||||||||| |||||| ||| || Sbjct 14948 CGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGAATCCCC 14889 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || ||||| ||| || |||||| ||||| ||| || | | ||| || ||||| Sbjct 14888 TCTTTATCTTGAAT-TTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACCTCCAA 14830 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| |||||||| || || || || || Sbjct 14829 TGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTG 14791 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| | ||||||||||||||||||||||| || || || | || || | ||||||||| Sbjct 14769 GACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATCTTC 14710 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 || || || |||||||| || | |||||||| || || ||| || ||| || || Sbjct 14709 GAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTCTTG 14650 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 ||| || ||| || ||||| ||| || | | ||| || ||||| || || || || Sbjct 14649 AATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGTTTT 14590 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| ||||| ||||| ||||| Sbjct 14589 ACCGGTGAGTGTTTTGACAAAGATTTG 14563 Score = 123 bits (136), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||||||||| || || | || || || | | ||||| ||| ||||||| || Sbjct 13689 TGGAGAGTCGACTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGT 13630 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || ||||||||||| | ||| || ||||| ||| |||||| ||||| ||||| Sbjct 13629 TTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTC 13570 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||||| || || | | ||| || ||||| |||||||| ||||| || Sbjct 13569 GCCTTTACATTTTCGATCGTATCCGACGGTTCCACTTCCAAAGTGATCGTTTTACCGGTT 13510 Query 199607 AGAGTTTTCACAAAAATTTGGTACATTTTAGCCT 199640 | ||||||||||| ||||| |||||| |||| Sbjct 13509 AATGTTTTCACAAAGATTTG---CATTTT-GCCT 13480 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| ||| || | |||||||||||||| || || | ||||| || | |||| Sbjct 14391 CGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTC 14332 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || |||| || || || || || || | |||||||| || || |||||| Sbjct 14331 CGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCC 14272 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || |||||||| ||| ||| ||||| || || | | ||| || ||||| Sbjct 14271 TCTTTGTCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAAT 14212 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || ||||| Sbjct 14211 GTGATGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTG 14174 Score = 104 bits (114), Expect = 5e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| | ||||||||||||||||||||| | || || || | || || | ||||||||| Sbjct 13924 GACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCTTC 13865 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 || || ||||||||||| || | |||||||| || || ||| || ||| || || Sbjct 13864 GAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATCTTG 13805 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 ||| || ||| || || | ||| || | | || || ||||| || || || || Sbjct 13804 AATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTTTT 13745 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || ||||| Sbjct 13744 GCCGGTGAGAGTCTTGACGAAGATTTG 13718 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||||||||| || || | ||||| || | ||||| ||| || |||| || Sbjct 14145 TGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCCTCCAATTGT 14086 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| ||||| || || | ||| || ||||| |||||| ||| ||||||||||| Sbjct 14085 TTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGAATCTTG 14026 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || || | ||| || | | ||| || ||||| ||||| || || || ||| Sbjct 14025 GCCTTAACATTCTCAATGGTATCGGAGGGTTCCACTTCCAAAGTGATGGTTTTGCCGGTG 13966 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || Sbjct 13965 AGAGTCTTAACGAAGATCTG 13946 >seq68991 Length=328 Score = 105 bits (116), Expect = 2e-17 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||||||||||| || |||||||| ||||| |||||||| || ||||| ||| ||||| Sbjct 13 TCCATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTC 72 Query 199531 TCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||| || ||| || || || ||||| || || | | ||| || ||||| | Sbjct 73 TTTGTCCTGTAT-TTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATG 131 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || ||||| |||||||||||||| || ||||| Sbjct 132 TAATGGTTTTACCGGTGAGAGTTTTCACGAATATTTG 168 >seq32426 Length=2656 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||||||||||||||||||||| | || || | | || || | ||||||||| || || Sbjct 457 GTGGAGAGTCGACTCCTTTTGAATATTATAATTGGACAGTGTACGTCCATCTTCGAGTTG 516 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || |||| |||||| | |||||||| || ||| ||| || ||| ||||| || || Sbjct 517 TTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGGAATACCCTCTTTGTCCTGTATTTT 576 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || ||||| ||| || | | || || ||||| || || | ||||| || Sbjct 577 GGCCTTTACATTTTCGATGGTATCGCTCGGCTCAACTTCCAATGTAATAGCTTTACCGGT 636 Query 199606 GAGAGTTTT 199614 ||| ||||| Sbjct 637 GAGTGTTTT 645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176800127265083