Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq21107 116 4e-21 >seq21107 Length=15695 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||||||||| || ||||| || || || | || ||||| || || |||||||| Sbjct 14751 CTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAA 14692 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| |||| || | | ||| ||||| || || ||| | | Sbjct 14691 AATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTCTTGAATTTTGGCCTTTACATT 14632 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || ||||||| ||| || |||| || |||||||| || || || ||||| || Sbjct 14631 TTCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGTTTTACCGGTGAGTGTTTTGAC 14572 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 14571 AAAGATTTGCAT 14560 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| ||||| || ||||| || || || | || ||||| || || |||||||| Sbjct 13906 CTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAA 13847 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| |||| || | | ||| || || || || ||| | | Sbjct 13846 AATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATCTTGAATTTTGGCCTTAACATT 13787 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||||||| || || |||| || ||||||||||| || || || || || Sbjct 13786 CTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGAC 13727 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 13726 GAAGATTTGCAT 13715 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || ||||| || ||||| ||||| || |||| || | || || || ||||| Sbjct 13678 CTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAA 13619 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||| || || | || | | || |||||| |||||| ||| | | Sbjct 13618 GATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCCTTTACATT 13559 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||| || || |||||| |||| ||||| ||||| || || | ||||| || Sbjct 13558 TTCGATCGTATCCGACGGTTCCACTTCCAAAGTGATCGTTTTACCGGTTAATGTTTTCAC 13499 Query 46582 AAAGATTTGCATTTTGC 46598 ||||||||||||||||| Sbjct 13498 AAAGATTTGCATTTTGC 13482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564246060399480