Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq17817 109 4e-19 seq21107 107 1e-18 seq68991 104 2e-17 seq14450 95.1 8e-15 seq32426 91.5 1e-13 >seq17817 Length=30685 Score = 109 bits (120), Expect = 4e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589 ||||||||||||||||||||| | | ||| | || |||||||||||||| |||||| Sbjct 813 CTTTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAA 754 Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG 39649 | | | ||| ||||||| ||| | ||||||||||| ||| || ||| | || Sbjct 753 TGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCT 694 Query 39650 CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGA 39709 ||| || || ||| || || || ||||| || || |||||||| ||||| || | Sbjct 693 CTATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAA 634 Query 39710 AGATCTGCAT 39719 |||| ||||| Sbjct 633 AGATTTGCAT 624 >seq21107 Length=15695 Score = 107 bits (118), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || |||||||| | ||| ||||| || ||||||||||||| | | ||| | Sbjct 13701 CGAAGAACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCG 13642 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||||||||||||| | || || | | ||| ||||||| ||| | ||||||||| Sbjct 13641 TCTTCCAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTG 13582 Query 39625 TCGCATAT-TTTTTGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 || ||| || |||| || ||| | || || | |||||| |||||||| | Sbjct 13581 TCCTGTATCTTCGCCTTTACATTTTCG--ATCGTATCCGACGGTTCCACTTCCAAAGTGA 13524 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| ||||| ||||| || ||||| ||||| Sbjct 13523 TCGTTTTACCGGTTAATGTTTTCACAAAGATTTGCAT 13487 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||||||||||||| | ||| ||||| || ||||| |||||| | | ||| | Sbjct 14385 CGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCG 14326 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||||||||||||| ||||||| || ||||||||||| | ||| | || |||||| Sbjct 14325 TCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTCTTTG 14266 Query 39625 TCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 || || || |||| | ||| || || || | |||||| ||||| || | Sbjct 14265 TCTTGAATCTTAGCCTTAACGTTTTCGATA--GTATCAGACGGTTCCACCTCCAATGTGA 14208 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || | || || |||||||| ||||| Sbjct 14207 TGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||||||||||| || ||| |||| || | |||||||||| | ||| Sbjct 14750 TCCTTTTGGATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAAA 14691 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTT-TTGTTTA-ATCG 39646 || || ||||||||||| | ||| | || |||||||| ||||| |||| || Sbjct 14690 ATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTCTTGAATTTTGGCCTTTACATTT 14631 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| | | | || || ||| || ||||| ||||| |||||||| || | ||||| | Sbjct 14630 TCGATGGTATCGCT-CG-GTTCAACTTCCAATGTAATGGTTTTACCGGTGAGTGTTTTGA 14573 Query 39707 CGAAGATCTGCAT 39719 | ||||| ||||| Sbjct 14572 CAAAGATTTGCAT 14560 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||||| || | || | ||| ||| ||||| |||||||| || | Sbjct 15014 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAG 14955 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || | || || |||||||| ||| |||| || | |||||||||||||| || Sbjct 14954 AGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGA 14895 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || ||||| || ||||| ||| | | | | || || | | |||||| Sbjct 14894 ATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACC 14835 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || |||||||| || | ||| || |||||||||||||| Sbjct 14834 TCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||||| ||| ||||| | ||| ||||| || ||||| |||||| | | ||| | Sbjct 14158 ACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCC 14099 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 || ||||||||||| || | ||||| | | ||| ||||||| ||| | || ||||| Sbjct 14098 GTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGAATTCCCTCTTT 14039 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 || || || |||| || | | || || | | |||||| |||||||| || Sbjct 14038 ATCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCACTTCCAAAGTGAT 13979 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || | ||| || |||||||||||||| Sbjct 13978 GGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || ||||| ||||||||||||| || ||| |||| || | |||||| ||| | ||| Sbjct 13905 TCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAA 13846 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || ||||||||||| | ||| | || ||||| || ||||| |||| || Sbjct 13845 ATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATCTTGAATTTTGGCCTTAACATTC 13786 Query 39649 GCTACTGTGTCTGCGC-TTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || || || | || || ||||| ||||| ||||| || || | ||| || || Sbjct 13785 TCAATGGTATC-GCTCGGCTCAACTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGAC 13727 Query 39708 GAAGATCTGCAT 39719 |||||| ||||| Sbjct 13726 GAAGATTTGCAT 13715 >seq68991 Length=328 Score = 104 bits (114), Expect = 2e-17 Identities = 122/163 (75%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 39559 CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCT 39618 ||| |||| ||||||||||| ||| |||| || | |||||| ||||||| ||| | ||| Sbjct 11 CGTCCATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCT 70 Query 39619 TCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCA 39676 |||||||| |||||| ||| || ||| || || || | | ||| || |||| Sbjct 71 TCTTTGTCCTGTATTTTCGCTTTGACATTTTCGATA--GTATCGGAGGGTTCGACTTCCA 128 Query 39677 AAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| |||||||| || | |||||| ||||| || ||||| Sbjct 129 ATGTAATGGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 >seq14450 Length=5806 Score = 95.1 bits (104), Expect = 8e-15 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589 ||||||||||||||||||| || | ||| | || |||||||||||||| | |||| Sbjct 5279 CTTTTTGTATATTATAATCACTCAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAAA 5338 Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG 39649 | | | ||| ||||||| ||| | || ||||| || ||| || |||| || Sbjct 5339 TGAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGTATCTTCGCCTTAACATTCT 5398 Query 39650 CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGA 39709 | | || || | |||||| |||||||| || || || |||||||| || || |||| Sbjct 5399 CAATGGTATCAGACGGTTCCACTTCCAAAGTGATGGTCTTTCCCGTTAATGTCTTAACGA 5458 Query 39710 AGATCTGCAT 39719 | || ||||| Sbjct 5459 AAATTTGCAT 5468 >seq32426 Length=2656 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/244 (68%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 39476 TACATATCCAATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTT 39535 || ||||| ||| | | |||| ||| ||||| || | || | ||| ||| |||| Sbjct 193 TAAATATCTAATAACCTCCGC---GCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTT 249 Query 39536 GTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAAC 39595 | ||||| || || | | | || | || ||||||||||| ||| |||| || | || Sbjct 250 GAATATTGTAGTCCGAGAGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGAC 309 Query 39596 GCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG 39655 |||| ||||||| || | || ||||| || ||||| ||| | || | | | Sbjct 310 GCTGTTGATCCGGAGGAATCCCCTCTTTATCTTGAATTTTGGCTTTGACATTCTCAATGG 369 Query 39656 TGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCT 39715 |||||| | |||||| |||||||| || ||||| || | | ||||| ||||| || | Sbjct 370 TGTCTGAGGGTTCCACTTCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTT 429 Query 39716 GCAT 39719 |||| Sbjct 430 GCAT 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346774999748417