Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq12381 201 9e-46 seq16054 140 2e-27 seq14641 131 1e-24 seq103556 114 1e-19 seq36471 91.5 1e-12 >seq12381 Length=2337 Score = 201 bits (222), Expect = 9e-46 Identities = 728/1115 (65%), Gaps = 22/1115 (2%) Strand=Plus/Plus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||||| |||| | ||||||||||| || || | ||| | || || ||||| ||||| Sbjct 1226 TTTATTGACGGCCGAAACATTAAGAATGCCGTTCGAATCGATCTCGAAAGTGACCTCAAT 1285 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 ||| |||| ||||| || | || || || || ||| | ||| | || || ||| Sbjct 1286 TTGGGGGATACCTCTGGGAACGGGCGGAATGCCGGTCAATTCGAATTTACCGAGCAAATT 1345 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || ||||| || | |||||||| || | | || || || | | ||||| Sbjct 1346 GTTGTCTTTCGTCATGGCACGTTCACCTTCATATACCTGAATCAATACCCCCGGTTGAT- 1404 Query 517429 ATCTGAA-TAAGTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCA 517486 || || ||||| || ||| |||| | | | | || || || ||||| | ||| Sbjct 1405 ATTTGCTGTAAGTGGTGAATG-TCTGTGTCTGTCGCGTGGGGATAGTGGTGTTACGCTCA 1463 Query 517487 ATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 517546 |||| ||||| | ||||| || ||||| | || || || || ||||||||||| Sbjct 1464 ATAAAGGCAGTCATGACCCCACCGGCAGTTTCAATGCCGAGTGAGAGTGGAGTGACATCC 1523 Query 517547 ACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGAC--CAACAAGAATAGCTGCTTGAA 517604 | || | | | ||| | ||| | |||| | || ||| || || || |||| Sbjct 1524 AAAAGTAGGAGCTCCAGAACCTGTTC--CGATTTGTCGCCATTAAGTATGGCCGCCTGAA 1581 Query 517605 TAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCAT 517664 || ||||| || || || ||||| || || || | ||| || |||| |||||||| Sbjct 1582 CTGCCGCACCGTACGCCACTGCTTCGTCGGGGTTTATGCTTTTGTTCAGTTCTTTACCAT 1641 Query 517665 TGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAAT 517723 ||||||| | |||||||| ||| | ||| || || || | ||||| || || || Sbjct 1642 TGAAAAAGTCCTGAAGAAGTT-TCTGGATCTTCGGTATGCGCGTCGATCCCCCGACCAAC 1700 Query 517724 ACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGT 517783 ||||| || || ||| || |||||||| ||| | || | ||||| || || Sbjct 1701 ACAATGTCGTGAACCGCTGCTTTATCCATTTTCGCGTCTCTGAGTGACTTTTCCACCGGA 1760 Query 517784 TCAAGACCCGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGT-AAGAG 517841 || ||| ||| || || | ||| | || ||||| || || | || | | Sbjct 1761 TCGAGA-GTGCTCCTGAAGAGGTCAGCGTTCAGCTCTTCAAACCGCGCACGTGTGATGTT 1819 Query 517842 TGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 517901 ||| | |||| || || ||||||| || || | ||||| | | ||||| || | Sbjct 1820 TGA-GTAGAAATCGATGCCCTCGAACAGTGAGTCGATCTCAATACTCGCCTGAGTTGATG 1878 Query 517902 AAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTG 517961 | |||| | ||||| || | ||| || | || | || | || || || | | Sbjct 1879 ATGATAACGTGCGTTTCGCTCTTTCGCAGGACGTGCGGAGACGTCTCAACGC--GCGTTT 1936 Query 517962 ATT-GATTC-AAATCTGTTTTATATTTTCTCTTGAAATCTTCAAC-ACACCATGTTACAA 518018 ||| ||| | ||||| | |||| ||| | || || || | ||| | | || | || | Sbjct 1937 ATTCGATGCTAAATCCTTCTTATGTTTGCGTTTAAATTCCTGAACGAAATGAT-TCACCA 1995 Query 518019 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 518078 ||||| ||||| ||||| |||||||| | |||| ||| | || | | | |||| || Sbjct 1996 TGCGATTGTCAAAGTCTTCGCCTCCCAAATGCGTATCTCCGGCGGTGGATTTCACTTCGA 2055 Query 518079 AAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAA 518138 | | || || |||| | | | | ||||| || || || |||| ||| || | Sbjct 2056 ATATACCGTCCTCAATGGTAAGTATCGACACATCGAAAGTGCCGCCCCCCAAATCGAAGA 2115 Query 518139 TAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAG 518198 | || |||||| | ||| | || ||||| |||||||| |||| || || |||| Sbjct 2116 TGAGGACATTCCTCTCTCCCTGACCCTTCTTATCGAGACCATAGGCAATGGCTGCGGCAG 2175 Query 518199 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 518258 | ||||| || || || | ||| || || ||||| || || |||| || ||||| |||| Sbjct 2176 TCGGTTCGTTGATGATACGCAACACGTTGAGACCGGCGATGGTTCCGGCGTCTTTCGTGG 2235 Query 518259 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCT 518317 | || | ||| || || || ||||| || || ||||||| ||||| | ||| || ||| Sbjct 2236 CCTGACGTTGGGAGTCATTGAAATAGGCGGGGACAGTAACGACGGCGTTAGTGACGGTCT 2295 Query 518318 TTACCAATATAAGCGCTTGCCGTTTGTTTCATTTT 518352 || || |||||||| ||| ||| |||||||| Sbjct 2296 TT-CCCATATAAGCCTCTGCTATTTCCTTCATTTT 2329 >seq16054 Length=2514 Score = 140 bits (154), Expect = 2e-27 Identities = 244/351 (70%), Gaps = 8/351 (2%) Strand=Plus/Plus Query 518017 AAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTG 518076 || ||| | ||||||||||||||||||||| | ||||| || || || | ||||| Sbjct 1549 AACACGCTGATCAAAATCTTCACCTCCCAAATGTGTATTGCCATTTGTTGCCATAACTTG 1608 Query 518077 GAAAAGTCCATCT-TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAA 518135 ||| | || || |||| | || || | ||||||| || || || |||| |||| Sbjct 1609 -AAATGCCCCACTGTCAATGGTCAGTAGTGATACATCAAAAGTCCCTCCCCCCAAATCAT 1667 Query 518136 AAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAG 518195 | | ||||||| || || || ||| | || | | |||||| |||| || |||| Sbjct 1668 ATACAAGTACAGTCTTTACTC---CTT---TATTGTAGAAACCATAAGCAATGGCTGCAG 1721 Query 518196 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 518255 | ||||||||||| |||||||| | || ||| | || || ||| | || |||| ||| | Sbjct 1722 CTGTTGGTTCATTGATAATTCTGATAATATTTAAGCCCGCGATTGTACCGGCATTTTTGG 1781 Query 518256 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTT 518315 | || |||| ||| | ||| || ||||| || || || |||| || || | || |||| Sbjct 1782 TCGCCTGTCGTTGAGCATCATTGAAATACGCCGGTACCGTAACCACAGCGTGTGTCACTT 1841 Query 518316 CTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTG 518366 || | ||| || |||||||| ||||||||| | || | ||||| Sbjct 1842 TCACTCCTAAATATGCTTCTGCCGTTTCTTTCATTTTCGTCAATACCATTG 1892 >seq14641 Length=26203 Score = 131 bits (144), Expect = 1e-24 Identities = 200/284 (70%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 ||||||||| |||||||| || || |||| || || | | | || | |||| Sbjct 5788 ATTATCAAAGTCTTCACCGCCTAAGAACGTATCCCCATTGGTTGATTTAACCTCAAAAAC 5729 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||| | || | ||||| | |||||| || || || |||| |||| ||| Sbjct 5728 TCCTTTTTGTATCTCCAAAATGGACACATCAAATGTCCCGCCCCCCAAATCATAAACGG- 5670 Query 518143 TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 || ||| |||| || | |||| || | |||||||||| || || || || || Sbjct 5669 --CAATCA---CTTTATCCTCAGTTTTGTCCATTCCATACGCAATGGCGGCTGCGGTCGG 5615 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 |||||||||| |||||||||||| ||||| || ||| ||| |||||||| ||||| || Sbjct 5614 CTCATTAATAACTCTCAAAACATTGAGACCCGCGATTTGTCCGGCATCTTTCGTGGCCTG 5555 Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | ||||| || |||||||| || || |||||||||||||||| Sbjct 5554 ACGCTGTGAGTCATTAAAATACGCGGGTACAGTAATAACGGCAT 5511 >seq103556 Length=230 Score = 114 bits (126), Expect = 1e-19 Identities = 151/204 (74%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC- 518223 ||||| || |||||||| |||| || ||||| || ||||| || ||||| |||||| Sbjct 19 TTTTTGTCGAGACCATAAGCAATGGCCGCAGCTGTGGGTTCGTTGATAATCTGCAAAACG 78 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 | ||| ||| || ||| || ||||||||||| || |||| ||||| ||| ||||| || Sbjct 79 ACTAA-ACCTGCGATTGCACCGGCATCTTTAGTTGCCTGTCGTTGTGCATCATTAAAGTA 137 Query 518284 TGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTACCAATATAAGCGCTTGCCGTTT 518342 || || || |||| || || | | ||| |||||| |||| ||| || |||||||| Sbjct 138 CGCGGGTACCGTAACCACAGCGTATGATACTTTCTTTCCCAA-ATATGCTTCTGCCGTTT 196 Query 518343 GTTTCATTTTACTTAAAATCATTG 518366 |||||||| | || | ||||| Sbjct 197 CCTTCATTTTGATCAACACCATTG 220 >seq36471 Length=27448 Score = 91.5 bits (100), Expect = 1e-12 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 870797 ATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGA 870856 ||| |||| ||||| ||| |||||| | ||||||||||||||| | |||||||| ||| Sbjct 15663 ATTGTTGTTGATTACAGTTCGCCAAATGTCGCTAAAGAAATGCATGTCGGACATTTGAGA 15722 Query 870857 TCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTAT 870916 ||||| |||||||| |||| | | || || | | || ||||||| | Sbjct 15723 AGCACTATCATTGGTGATAGCATTTCAAATCTGTTTGAGTTCTTAGGTTACGATGTCTTA 15782 Query 870917 CGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTA 870961 | || ||||| | ||||||||||||||||| || || ||| || Sbjct 15783 AGAATCAATCACATCGGTGATTGGGGAACTCAGTTTGGGATGCTA 15827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3773852857980994