Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq8365 165 1e-35 seq21474 96.9 4e-15 >seq8365 Length=5311 Score = 165 bits (182), Expect = 1e-35 Identities = 892/1400 (64%), Gaps = 43/1400 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| | || || || || | || ||||| ||| Sbjct 2374 CCGCAGCACATGCTCATGCGTGTCGCTGTGGGGATACACGGAAATGACATTGACGCTGCC 2315 Query 111672 TTGGAGACATACGACAAGATGTCC---CG-TGGTATGTTCATCCACGCAACACCAACCCT 111727 | ||||| || | |||||| || |||| | |||| ||| |||| || || Sbjct 2314 ATTGAGACGTATAATCTCATGTCCGAACGATGGTTTACTCAT----GCATCACCGACACT 2259 Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTG-CAAACAAGG 111786 ||||| || || || || || ||| |||||||||||||| |||||| | | || | Sbjct 2258 GTTCAATGCCGGAACTCCGCACCCACAATTGTCCAGTTGTTTC-TTATTGACCATGAAAG 2200 Query 111787 AGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGG 111846 | || || | || ||||||| ||| |||| |||| || || || || | Sbjct 2199 ATGACAGTATTGAGGGGATTTACGACACACTCAAACAATGCGCTGTCATATCGAAAGCTG 2140 Query 111847 CTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTA 111906 | ||||||||||| || | | ||| | || || || || |||| |||| Sbjct 2139 CCGGTGGTATCGGAATAAATGTTCATTGCATAAGGGCTAAGGGCACTTATATTGCGGGTA 2080 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 | ||||| |||| |||| | | || ||| | ||||| || ||| || || || | Sbjct 2079 CGAATGGCATATCAAATGGATTGGTCCCGATGTTGCGCGTGTTCAACAATACTGCCCGAT 2020 Query 111967 ATGTAAACCAAGCTGGG------CGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 | || | || | ||| |||| | || || ||||||| || | || || | Sbjct 2019 ACGTCGATCAGGGGGGGAACAAACGTCCC---GGCGCTTTCGCAGTTTACATCGAACCGT 1963 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 |||| || ||| | | || ||||| || | | ||| ||| |||||| | Sbjct 1962 GGCATGCCGATGTATTCGAATTCCTCGACCTTAGGAAGAACACGGGTTCTGAGGAAATAC 1903 Query 112081 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 | ||| || || | |||| | || |||||||| ||| | |||||||| | ||||| Sbjct 1902 G-TGCACGTGACTTGTTCTATGGCCTTTGGATTCCCGATTTGTTCATGAAACGTGTTGAA 1844 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGT 112198 ||| | ||||| | | |||||| || || || || ||| | || | Sbjct 1843 TCCGATGGGATATGGTCATTGATGTGTCCACACGAATGC-CCGGGTTTACATGACACGTG 1785 Query 112199 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAA-GTCGGGCGACTGCGA 112257 |||| ||| |||||| | | || || ||||| ||||| | | | | | Sbjct 1784 GGGTCAGGCGTTTGAGGATTTATATGAGAAATACGAAAGAGAAAAGAAATACAAACGTCA 1725 Query 112258 CGGTGCCAGCTGCCG--ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 ||| | ||| | | || ||||| | || ||| || || |||| | |||||| || || Sbjct 1724 -GGTTCGGGCT-CAGTCAT-TGTGGTATGCCATTGTCGAGGCTCAGATCGAGACGGGCAC 1668 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 ||| || ||| |||| |||||| || |||| |||| |||||| | ||| | || Sbjct 1667 ACCGTACATGGTTTATAAAGACCATTGCAACCGAAAGTCCAATCAACAAAATCTCGGAAC 1608 Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 112435 || || | || || || || || |||||| | |||| | || || || | || Sbjct 1607 CATTAAATGCTCAAATCTATGCACTGAAATCGTTGAATATTCATCTCCCGACGAAATTGC 1548 Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATT 112495 |||||||| | || ||| |||| ||| || || || | | || || || Sbjct 1547 CGTGTGTAATTTGGCTTCAGTCGCACTCAATCGGTTCGTCGACACCAAAACCCGCACCTT 1488 Query 112496 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 ||| | | ||| ||| | || || | ||| | || |||| |||| | |||| Sbjct 1487 TGACTTCGCAAAGCTCAAGGATGTCGCTAAAGTCATTACCCGAAACTTAAATAAGATTAT 1428 Query 112556 TGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612 |||| |||| ||| |||||| || || | || || |||| || ||||||| Sbjct 1427 CGATATTAATTATTATCCCGTTCCTGAAACGGAACGC---TCCAATAAAAGGAACCGTCC 1371 Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA 112672 ||||| | || || || || | || |||| |||||||| || || | ||||| Sbjct 1370 GATTGGCATTGGAGTTCAGGGATTAGCCGATGCGTTCATTCTCATGCGTTACCCGTTTGA 1311 Query 112673 T--TCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCT 112730 ||| ||||||||| ||||| | |||||||||||| | ||| || ||| Sbjct 1310 GAGTCC--CGAAGCGAAACGTCTCAATATTCAAATATTTGAGACATTATATTTCGGGGCT 1253 Query 112731 CTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790 || || |||||| || |||||| | ||||||| || || | | |||||||||| Sbjct 1252 CTCGAATCGAGTTGTGAATTGGCACAACAGTATGGTCCTTACGAGTCATATGAGGGTTCT 1193 Query 112791 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA- 112849 || || || ||||| | || || | ||| |||| |||| || ||| | | ||| Sbjct 1192 CCCGCCTCTAAAGGGATACTGCAGTATGACATGT-GGAATAAGACACCGA-CAGACCTAT 1135 Query 112850 CGACTGGGAC-GCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908 || | |||| | || |||||| ||||| | | || || | |||||||| ||| Sbjct 1134 GGAATTGGACTGAACTGAAGGAAAAGATCAAAATGCACGGACTCAGGAACAGTCTGTTGT 1075 Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 | ||||| ||||| || || || || ||||| || ||||| ||||| || | ||||| Sbjct 1074 TAGCACCGATGCCGACGGCATCGACAGCACAGATTTTGGGAAATAACGAGTCTGTTGAAG 1015 Query 112969 CCTACACGACGAACATCTAT 112988 | || |||| || || ||| Sbjct 1014 CGTATACGAGTAATATATAT 995 >seq21474 Length=6928 Score = 96.9 bits (106), Expect = 4e-15 Identities = 222/329 (67%), Gaps = 4/329 (1%) Strand=Plus/Plus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 ||||| || || | | || ||||| | ||||||||||| ||||| ||||| ||| Sbjct 5710 TTTGCCGAACGTTTAGTTGCGTTTGCATCAGTTGAGGGTATATTCTTTAGCGGTTCATTC 5769 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 | | || | |||||| ||||| || || || ||||| || | |||| || || Sbjct 5770 GCCTCAATATTTTGGCTAAAGAAACGTGGACTTATGCCGGGATTGACCTTCAGTAATGAA 5829 Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG-GTGGAACTTTTCAAATTATT 102352 || || || ||||| |||||||| || || || ||| || | ||| || ||| Sbjct 5830 CTGATATCACGTGATGAGGGACTTCATTGTGATTTCGCGTGTTTACTCTTTAAACATATC 5889 Query 102353 GCGTATTAAACCAACGACTGAGACTATTCATTC-TATTGTTAAGGAAGCCGTTGAGATTG 102411 | || |||||||||| || || | ||| || |||||||| ||||| || |||| Sbjct 5890 G-TTAATAAACCAACGGTCGA-ACAAATCACTCGTATTGTTACTGAAGCTGTGACCATTG 5947 Query 102412 AGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGA 102471 | ||| || | ||||| ||||| ||| |||||||||||||| | || | || Sbjct 5948 AACAGGAGTTTTTGACCGATGCACTTCCGGTCGCACTCATCGGTATGAACTGTGTACTGA 6007 Query 102472 TGTCCGAATATATTGAGTATGTATCTGAT 102500 || ||| ||||| ||||| ||||| Sbjct 6008 TGAAGTCATACATTGAATATGTCGCTGAT 6036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619652616883280