Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq8365 107 2e-18 >seq8365 Length=5311 Score = 107 bits (118), Expect = 2e-18 Identities = 460/720 (64%), Gaps = 14/720 (2%) Strand=Plus/Plus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||| || || |||| || | ||||| | || ||||| ||||| || ||||| || || Sbjct 995 ATATATATTACTCGTATACGCTTCAACAGACTCGTTATTTCCCAAAATCTGTGCTGTCGA 1054 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 || || ||||| ||||| | ||| |||||||| | || || | ||||| ||| Sbjct 1055 TGCCGTCGGCATCGGTGCTAACAACAGACTGTTCCTGAGTCCGTGCATTTTGATCTTTTC 1114 Query 106054 CTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGA 106111 ||| || || ||| | | ||| | | | ||| || |||| |||| ||| | || Sbjct 1115 CTTCAGTTCAGTCCAATTCCATAGGTCTG-TCGGTGTCTTATTCC-ACATGTCATACTGC 1172 Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171 || | ||||| || | ||||||||||||| ||| ||| || | ||| | || ||| Sbjct 1173 AGTATCCCTTTAGAGGCGGGAGAACCCTCATATGACTCGTAAGGACCATACTGTTGTGCC 1232 Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 |||||||| |||| || || | || ||| | || ||||| || || ||| | Sbjct 1233 AATTCACAACTCGATTCGAGAGCCCCGAAATATAATGTCTCAAATATTTGAATATTGAGA 1292 Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 106291 || ||||| ||||| | ||| || | ||| || |||| || | || Sbjct 1293 CGTTTCGCTTCGGGACTCTCAAACGGGTAACGCATGAGAATGAACGCATCGGCTAATCCC 1352 Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACG 106348 ||||| || | ||||| || | || | |||| || || | || || |||| Sbjct 1353 TGAACTCCAATGCCAATCGGACGGTTCCTTTTATTGGA---GCGTTCCGTTTCAGGAACG 1409 Query 106349 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 106408 |||||| |||| | || || | |||| ||| ||||| | || | || || Sbjct 1410 GGATAATAATTAATATCGATAATCTTATTTAAGTTTCGGGTAATGACTTTAGCGACATCC 1469 Query 106409 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATAC--TTTGGAAGGGCGA 106466 | || ||| | | ||||| ||||| || | | ||| || ||| || |||| Sbjct 1470 TTGAGCTTTGCGAAGTCAAAGGTGCGGGTTTTGGTGTCGACGAACCGATTG--AGTGCGA 1527 Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526 ||| |||||||| || || || | || || | || || || | ||||| || | Sbjct 1528 CTGAAGCCAAATTACACACGGCAATTTCGTCGGGAGATGAATATTCAACGATTTCAGTGC 1587 Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCAT 106586 | | || || | ||||| || || | ||| | ||| || |||| |||||| | Sbjct 1588 ATAGATTTGAGCATTTAATGGTTCCGAGATTTTGTTGATTGGACTTTCGGTTGCAATGGT 1647 Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 | || || | |||||| || || |||||||| |||| | || || ||| || | ||||| Sbjct 1648 CTTTATAAACCATGTACGGTGTGCCCGTCTCGATCTGAGCCTCGACAATGGCATACCACA 1707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588945022332760