Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq32426 141 2e-28 seq21107 141 2e-28 seq14450 113 1e-19 seq17817 105 1e-17 seq68991 91.5 3e-13 >seq32426 Length=2656 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || ||||||||||| || || |||||||||||||| || | ||||| | || || Sbjct 221 CAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAGAGAGTACGGCCGTC 280 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || | || || || || ||||| || || ||||| || |||||||| || ||||| || Sbjct 281 CTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGAATCCCCTCTTTATC 340 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||||||| ||||| |||||||||||||| || ||||||||| | || | || Sbjct 341 TTGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCACTTCCAAAGTGATAGT 400 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | | ||||| ||||| | |||||| Sbjct 401 TTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 Score = 107 bits (118), Expect = 4e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| ||||| ||||| ||||||||||| |||| || || || | |||||| Sbjct 449 AACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGACAGTGTACGTCCATCT 508 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||| || || || | |||||| | ||| || || || |||||||| || |||||||| Sbjct 509 TCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGGAATACCCTCTTTGTCC 568 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || ||||| ||| || || || ||||| || Sbjct 569 TGTATTTTGGCCTTTACATTTTCGATGGTATC 600 >seq21107 Length=15695 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | | ||| | || ||||| |||||||| |||||||| ||||||| |||||| Sbjct 13707 CTGAGGCGAAGAACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAAAGAGTC 13648 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | || ||||| | || || || |||||||| |||| ||||| || || ||||| ||| Sbjct 13647 CGTCCGTCTTCCAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCT 13588 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 |||||||| || || || ||| || || || || || ||||| ||||||||| | Sbjct 13587 TCTTTGTCCTGTATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCCACTTCCAAA 13528 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || | ||| || || || || ||||| || || | |||||||| Sbjct 13527 GTGATCGTTTTACCGGTTAATGTTTTCACAAAGATTTGCATTT 13485 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| ||||| ||||| ||||||||||| ||||||| || || | |||||| Sbjct 13926 AAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCT 13867 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||| || || || ||||| || | ||| || || || || ||||| || ||||| ||| Sbjct 13866 TCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATCT 13807 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| || ||||||||||| || || ||||| | |||| || Sbjct 13806 TGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTT 13747 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||| || ||||| | |||||| Sbjct 13746 TTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | ||| || | || ||||| |||||||| ||||||||||||||| ||||| Sbjct 14163 CTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTC 14104 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | || || || | || || || ||||| ||||||| ||||| || || ||||| || Sbjct 14103 CGTCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGAATTCCC 14044 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 ||||| || ||||| || ||| || ||||||||||| || || ||||||||| | Sbjct 14043 TCTTTATCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCACTTCCAAA 13984 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || || | ||| || ||||| | ||||| Sbjct 13983 GTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| ||||| ||||| ||||| ||||| ||||||| || || | |||||| Sbjct 14771 AAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATCT 14712 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||| || || || ||||| || | ||| || || || || ||||| || ||||||||| Sbjct 14711 TCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTCT 14652 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| || || || ||||| || ||| ||||| | |||| || Sbjct 14651 TGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGTT 14592 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||| || || | |||||| Sbjct 14591 TTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || ||||||||||| || || ||||||||||| || || | ||||| | || || Sbjct 15000 CAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAGAGAGTACGGCCGTC 14941 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || | || || || || ||||| || || || || || |||||||| || ||||| || Sbjct 14940 CTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCTTTATC 14881 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||||||| || ||||| || ||||| || || |||||| || | || | || Sbjct 14880 TTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACCTCCAATGTGATGGT 14821 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||| || ||||| | ||||| Sbjct 14820 TTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| |||||||| ||||||||||||||| ||||| | || || || | || Sbjct 14373 TGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCCTCCAATTGT 14314 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | || || || || || ||||| || |||||||||||||| || Sbjct 14313 TTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTCTTTGTCTTGAATCTTA 14254 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||| || || || || || |||||| || | || | |||||||| || Sbjct 14253 GCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAATGTGATGGTCTTTCCGGTG 14194 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 14193 AGTGTCTTGACGAAGATTTGCAT 14171 >seq14450 Length=5806 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||||||| ||||| ||||| ||||| | || ||||| | || || || ||||| | Sbjct 5279 CTTTTTGTATATTATAATCACTCAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAAA 5338 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | |||| ||||| || || ||||| || ||||| || || || || ||| || |||| Sbjct 5339 TGAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGTATCTTCGCCTTAACATTCT 5398 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 ||||||| || || ||||||||| | || | |||||||| || || || || |||| Sbjct 5399 CAATGGTATCAGACGGTTCCACTTCCAAAGTGATGGTCTTTCCCGTTAATGTCTTAACGA 5458 Query 195131 ACACTTGCATTT 195142 | | |||||||| Sbjct 5459 AAATTTGCATTT 5470 >seq17817 Length=30685 Score = 105 bits (116), Expect = 1e-17 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||||||| ||||| ||||||| |||||| | || ||||| | || || || || || | Sbjct 813 CTTTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAA 754 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | |||| ||||| || || ||||| ||||||||||| || || || || || |||| Sbjct 753 TGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCT 694 Query 195071 CAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTA 195127 | || || || ||| ||| || || | |||| |||||||| || || ||||| | Sbjct 693 CTATCGTATC---ACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCA 637 Query 195128 CGAACACTTGCATTT 195142 | || | |||||||| Sbjct 636 CAAAGATTTGCATTT 622 >seq68991 Length=328 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | || || || || ||||| || || ||||| || || ||||| |||||| Sbjct 14 CCATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCT 73 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || ||||| ||||| || || || || || || ||| ||||| | ||| Sbjct 74 TTGTCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATGTA 133 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||| ||||| | |||||| Sbjct 134 ATGGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| |||||||| || ||||| || || | |||||||| | || Sbjct 197 TGAAGTGTCGACTCCTTTTGAATGTTATAATCACTGAGTGTACGTCCATCTTCCAATTGT 256 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || || ||||| || || ||||| || ||||| ||||||||||| Sbjct 257 TTCCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATACCCTCTTTATCTTGAATTTTA 316 Query 195058 TGCTTGACGTTC 195069 ||||| ||| Sbjct 317 GCTTTGACATTC 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107485084740383