Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq21107 107 1e-18 seq17817 82.4 5e-11 >seq21107 Length=15695 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | ||| || | ||||| || ||| || ||||| ||||||||||| Sbjct 15014 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAG 14955 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || || | |||||||||||||| || || || ||||| || | || Sbjct 14954 AGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGA 14895 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||| || || ||| ||| ||| ||| | | || | ||| || || || Sbjct 14894 ATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACC 14835 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || |||||||| || ||||||||||| || ||||||||||| Sbjct 14834 TCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || ||||| ||||| || || || | ||| |||| || || ||||||||||| || Sbjct 13905 TCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAA 13846 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| ||||| || | || | ||||| || || ||| || || || || Sbjct 13845 ATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATCTTGAATTTTGGCCTTAAC--AT 13788 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | | |||||| || | || |||||||| || ||||||||||| | Sbjct 13787 TCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGA 13728 Query 34969 CAAAGATCTGCAT 34981 | ||||| ||||| Sbjct 13727 CGAAGATTTGCAT 13715 >seq17817 Length=30685 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| || || ||||| || ||||| | ||| | || |||| ||||| || ||||| | Sbjct 813 CTTTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAA 754 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | |||| || || || | || | ||| || ||||| |||||| ||| || Sbjct 753 TGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCT 694 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 |||||| |||| | || || || | || ||||| |||||||| | || ||||||| Sbjct 693 CTATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAA 634 Query 34972 AGATCTGCATATT 34984 |||| ||||| || Sbjct 633 AGATTTGCATTTT 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324077917464072