Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq3095 95.1 1e-14 seq25473 82.4 9e-11 >seq3095 Length=5575 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22782 GGGCGGATCAGTTGCACCAGGAACAGTTGCGTTTATTGCAGGAAACTTTGCGCCTGCAGG 22841 |||| ||| | | || | || || |||| || |||| ||||| ||| ||| |||| Sbjct 3037 GGGCACATCCGCTCCAGCTGGTACCATTGCCTTCTTTGCCCGAAACACTGCACCTACAGG 3096 Query 22842 TTGGTTGAAAGCCAACGGAGCAATACTCACTCGTTCTGTATATTCTGATCTATTTGCAGC 22901 |||| | |||| || || | | || ||||| | | ||| |||||||||| | || Sbjct 3097 TTGGCTTGAAGCGAATGGCGAGACGGTCTCTCGTACCATGTATGCTGATCTATTCACCGC 3156 Query 22902 AATTGGTACAACTTTTGGAGCTGGAAATGGATCCACAACATTTGCAATTCCAGATCTCCG 22961 ||||||||||||||||| |||| |||| || |||||| | | || ||||| || Sbjct 3157 TATTGGTACAACTTTTGGCAATGGAGATGGCAGCAAAACATTCAAACTGCCTGATCTACG 3216 Query 22962 TGGTGAATTTATAAGATGTTGGGCTGATGG 22991 ||||||||||| | ||||| | |||| Sbjct 3217 CGGTGAATTTATTCGTGGTTGGAGTAATGG 3246 >seq25473 Length=12443 Score = 82.4 bits (90), Expect = 9e-11 Identities = 121/168 (72%), Gaps = 5/168 (3%) Strand=Plus/Plus Query 22817 TTGCAGGAAACTTTGCGCCTGCAGGTTGGTTGAAAGCCAACGGAGCAATAC-TCACTCGT 22875 |||| ||||| ||| ||| |||||||| | | || || || |||| || ||||| Sbjct 10093 TTGCCAGAAACACTGCACCTACAGGTTGGCTTGAGGCGAATGG-GCAAGGGGTCTCTCGT 10151 Query 22876 TCTGTATATTCTGATCTATTTGCAGCAATTGGTACAACTTTTGGAGCTGGAAATGGATCC 22935 | ||| | ||||||||||| || ||||||||||| ||||| |||| | || Sbjct 10152 ACCACGTATGCCGATCTATTTGCCGCTATTGGTACAACCTTTGGCAGTGGAGACGG---T 10208 Query 22936 ACAACATTTGCAATTCCAGATCTCCGTGGTGAATTTATAAGATGTTGG 22983 | |||||| | | || ||||| |||||||||||||| ||| ||||| Sbjct 10209 AGTACATTTCAACTGCCCGATCTACGTGGTGAATTTATCAGAGGTTGG 10256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570270664926920