Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq8365 491 5e-134 seq21474 143 3e-29 >seq8365 Length=5311 Score = 491 bits (544), Expect = 5e-134 Identities = 1485/2293 (65%), Gaps = 72/2293 (3%) Strand=Plus/Plus Query 46967 TTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATA 47026 |||| ||| || ||||| || | ||| | ||| ||| | ||| || || ||||| || Sbjct 602 TTTGGATTTATCGACAGTGAATTGAATAGCATTTGCCGCGGGTTTCGTACGCAAATAGTA 661 Query 47027 CATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATA 47086 ||| || |||||||| || || |||| || | || ||||| || | || | Sbjct 662 CATCCCCGTCTTTAACCCCAATTTCCAGCCGTGAAAGTGCATCGATGTGATCTTTGCCAT 721 Query 47087 ACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATC 47146 | ||| ||| |||||||| ||||| ||||| || || ||||| || || || | ||| Sbjct 722 TGTGGGTGCTGCGATATGAATGTTAAGCGATTGGCTTTGGTCAATGAAAGCCCCGCGATC 781 Query 47147 AGCTGCCATATCTAAAATAACCCTT---TGTGGTATCTCCCATACTGTTTTATAAATTTG 47203 || | ||| || |||||| | |||| ||| |||||||||||||| || | || Sbjct 782 GGCAGACATTTC---AATAACTGTACGCTGTGATATTTCCCATACTGTTTTGTACAGTTC 838 Query 47204 TTTAATGTCTTCTGGGAGATT-----AGTATTTTGAATAGATCCTCCgttttctataatt 47258 || | || ||||| ||| | | |||||| ||||| || || ||| Sbjct 839 CTTCAAATC--CTGGGGAATTCCCTCAATCAATTGAATCGATCCGTGATTAGAAATTATT 896 Query 47259 ttgtttttta-att--catttgaccaaagttttcgttcagttaatgtttttaaAAGATGA 47315 | || || | ||| |||| |||||||| |||||||| || | | ||||||||| Sbjct 897 TCATTCTTAAGATTATCATT---CCAAAGTTCACGTTCAGTCAAATCTCTCAAAAGATGA 953 Query 47316 GGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATAT 47375 ||||||| |||||||||||||| || | ||||| || |||||||||||| ||||| Sbjct 954 TGATTAACGATTTGAAATTCTCCGGACAAAACTCTTCGTGAATATATATTACTCGTATAC 1013 Query 47376 GGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCA 47435 | ||| | ||| || |||||||| ||||| || || || ||||| || ||||| | ||| Sbjct 1014 GCTTCAACAGACTCGTTATTTCCCAAAATCTGTGCTGTCGATGCCGTCGGCATCGGTGCT 1073 Query 47436 ACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCC 47495 | || | || || || | ||| | ||| |||| |||||| | Sbjct 1074 AACAACAGACTGTTCCTGAGTCCGTGCATTTTGATCTTTTCCTTCAGTTCAGTCCAATTC 1133 Query 47496 CAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGA 47555 || || |||| || |||||| | ||||| || || || |||||| ||| Sbjct 1134 CATAGGTCTGTCGGTGTCTTATTCCACATGTCATACTGCAGTATCCCTTTAGAGGCGGGA 1193 Query 47556 GAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAAT 47615 ||||| | ||||| | |||||||| || ||| || | ||||||||| | ||| | Sbjct 1194 GAACCCTCATATGACTCGTAAGGACCATACTGTTGTGCCAATTCACAACTCGATTCGAGA 1253 Query 47616 GCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCA 47675 || | |||||| ||| |||||||||| || || ||| | ||||| | ||| Sbjct 1254 GCCCCGAAATATAATGTCTCAAATATTTGAATATTGAGACGTTTCGCTTCGGGACTCTCA 1313 Query 47676 AAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGT 47735 || || || || | ||| || ||||| ||||| ||||| ||||| || Sbjct 1314 AACGGGTAACGCATGAGAATGAACGCATCGGCTAATCCCTGAACTCCAATGCCAATCGGA 1373 Query 47736 CTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATT 47795 | | ||||||| || || | ||| || | ||||| | || ||||| ||||| Sbjct 1374 CGGTTCCTTTTATTGGAGCGTTCCGTTTCAGGAACGGGATAATAATTAATATCGATAATC 1433 Query 47796 TTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTG 47855 ||||||| | | || | | || || ||||| || Sbjct 1434 TTATTTAAGTTTCGGGTAATGACTTTAGCGACATCCTTGAGCTTTGCGAAGTCAAAGGTG 1493 Query 47856 TTATTTATA------ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACC 47909 || | || |||| ||| ||||| | || || | |||||| || || | Sbjct 1494 CGGGTTTTGGTGTCGACGAACCGATTGAGTGCGACTGAAGCCAAATTACACACGGCAATT 1553 Query 47910 TCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCC 47969 || | ||| | ||||| | ||||||| |||||||| ||||| || || || Sbjct 1554 TCGTCGGGAGATGAATATTCAACGATTTCAGTGCATAGATTTGAGCATTTAATGGTTCCG 1613 Query 47970 AAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCA 48029 | |||||| ||||| ||| || ||| || |||| ||| | ||||| || Sbjct 1614 AGATTTTGTTGATTGGACTTTCGGTTGCAATGGTCTTTATAAACCATGTACGGTGTGCCC 1673 Query 48030 GTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTA--TAACAGCTC 48087 || || ||||||| || | || | | ||| | | | |||| | | || | Sbjct 1674 GTCTCGATCTGAGCCTCGACAATGGCATACCACAATGACTGAGCCCGAACCTGACGTTTG 1733 Query 48088 TAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACAT 48147 || ||| || || ||||||||| |||||| | |||||| | | || || | Sbjct 1734 TA--TTTCTTTTCTCTTTCGTATTTCTCATATAAATCCTCAAACGCCTGACCCCACGTGT 1791 Query 48148 TATCTAACCCAGGACATTCATTAGGACACATCAATGACCA-ATCCTCATCATTTTTTACT 48206 || ||| || || ||||| | ||||||||||||||||| |||| |||| || || Sbjct 1792 CATGTAAACCCGGGCATTCGTGTGGACACATCAATGACCATATCC-CATCGGATTCAACA 1850 Query 48207 CTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTC 48265 | |||| || | ||| || |||||||| || ||| || || || | | | || ||| Sbjct 1851 CGTTTCATGAACAAATCGGGAATCCAAAG-GCCATAGAACAAGTCACGTGCACGTATTTC 1909 Query 48266 TTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTC 48325 ||| || | ||| | |||| || || || || | || ||| |||||||| ||||| Sbjct 1910 CTCAGAACCCGTGTTCTTCCTAAGGTCGAGGAATTCGAATACATCGGCATGCCACGGTTC 1969 Query 48326 TAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGT 48385 | || | ||| | | || || ||||| || || || ||||| | |||| |||||| Sbjct 1970 GATGTAAACTGCGAAAGCGCCGGGACGTTTGTTCCCCCCCTGATCGACGTATCGGGCAGT 2029 Query 48386 ATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAAT 48445 |||||| | || | ||||| ||||| | ||||||||||| ||||| || |||| ||| Sbjct 2030 ATTGTTGAACACGCGCAACATCGGGACCAATCCATTTGATATGCCATTCGTACCCGCAAT 2089 Query 48446 ATAACTTCCACTAGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTT 48502 |||| | || |||| ||||| || | | || || || |||||||| || ||| Sbjct 2090 ATAAGTGCCCTTAGCCCTTATGCAATGAACATTT---ATTCCGATACCACCGGCAGCTTT 2146 Query 48503 AGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562 ||||| | ||| || |||| || || || ||||| || || ||||| |||||| |||| Sbjct 2147 CGATATGACAGCGCATTGTTTGAGTGTGTCGTAAATCCCCTCAATACTGTCATCTTTCAT 2206 Query 48563 ATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGG 48622 | |||| |||||||| |||| ||| || || |||||| | ||| || | ||| || Sbjct 2207 GGTCAATAAGAAACAACTGGACAATTGTGGGTGCGGAGTTCCGGCATTGAACAGTGTCGG 2266 Query 48623 AGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTAT 48682 ||||||||| |||||||| || || | | ||||| || ||||| ||| || || Sbjct 2267 TGATGCATGAGTAAACCATCGTTCGGACATGAGATTATACGTCTCAATGGCAGCGTCAAT 2326 Query 48683 ATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 || | ||||| || | || |||||||| | ||| | || |||| ||| | | Sbjct 2327 GTCATTTCCGTGTATCCCCACAGCGACACGCATGAGCATGTGCTGCGGTCGTTCCGCGAC 2386 Query 48743 TTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGT- 48801 ||| |||| || || | | |||||| || | |||||| ||||| ||||| |||| Sbjct 2387 TTTCCTATTGATCTTAATTAAATATGACCGCTCAAGTGTTTTGAAACCGAAATAATTGTA 2446 Query 48802 ATGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTTATATACTA 48861 |||| || ||| ||||| ||| || | ||||| | || ||| || || | | | Sbjct 2447 ATGATAA-TCGCGATCATAAATGATGGCGGAATTGAGTCGTTCGGCATTCTTTTCAATGA 2505 Query 48862 CATC--------CAT---------TACATTTTTTGATATAATT------GATTC----CT 48894 |||| ||| | | |||||| | ||| | ||| | Sbjct 2506 CATCGTAAATCTCATCTGAAATCATCGGTGTTTTGAGACCATTACTCTCGTTTCTCATAT 2565 Query 48895 TGTAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATA 48954 || ||||| | ||||| ||| |||| |||||||||||||| | ||| || | Sbjct 2566 GATAGAGATCCCTAATGACATCGGAAAAGTTTTTCTTTGTTTCTTTATGTAAATTTGACA 2625 Query 48955 TAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTACTAGATA 49014 | || | || || | ||||||||||| | ||| | ||||| ||| | | Sbjct 2626 CTGCAATACGTGCCGCGAGAATAGCATAATCGGCATGTTTCGTTGTCATTGTTGCGGCGA 2685 Query 49015 TTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAA 49074 |||| || ||||| |||| ||||| || || ||||| | |||||| || || | Sbjct 2686 TTTCCGCCGCTAAATTATCCAATTCAACGGTCGTGACACCCGAATATATCCCGGCGATGA 2745 Query 49075 CTTTCATTGCTATATTTAC--TGGATCTATATGATCCATATCCAGTCCATAACATAAttt 49132 | |||| || ||| || || ||| || | || ||| |||| ||||| || | ||| Sbjct 2746 CCTTCAATG--TGATTGACGGTGCATCGATGTAATTCATGTCCAAACCATAGCAGAGTTT 2803 Query 49133 ttttATTCTAGATGTAATTTTATCAAACATTATATTCTCTTTACGACCGTCACGTTTTAT 49192 |||| ||||| ||||| || ||||| | ||||| || ||||| | ||| || Sbjct 2804 CACGATTCGGGATGTGATTTTGTCGAACATAACTGATTCTTTTCGTCCGTCTCTTTTAAT 2863 Query 49193 AACAAACATCTTT 49205 ||| |||| ||| Sbjct 2864 TACATACATTTTT 2876 >seq21474 Length=6928 Score = 143 bits (158), Expect = 3e-29 Identities = 238/338 (70%), Gaps = 8/338 (2%) Strand=Plus/Minus Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 || ||||| | |||| | ||| || ||| ||| ||| |||| ||||||| |||| Sbjct 6056 CCCAATTCAATGAGTAAACGATCAGCGACATATTCAATGTATGACTTCATCAGTACACAG 5997 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| || || | | || || |||||||| || | ||| || ||||| || | || Sbjct 5996 TTCATACCGATGAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACA 5937 Query 18895 GCCTCTGATATAATAGATACAACTC-TATCTTCATTAGGAGGGT-ATAGAAGAT--GTTT 18950 || || | ||| | |||| | | | | ||| | || | || | ||| |||| Sbjct 5936 GCTTCAG---TAACA-ATACGAGTGATTTGTTCGACCGTTGGTTTATTAACGATATGTTT 5881 Query 18951 AAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGA 19010 ||| | ||||| || ||||||||||| |||||||| || | ||||| ||||||| Sbjct 5880 AAAGAGTAAACACGCGAAATCACAATGAAGTCCCTCATCACGTGATATCAGTTCATTACT 5821 Query 19011 AAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCC 19070 || || || || ||||| ||||| | ||| |||| ||| ||||| || || ||||| || Sbjct 5820 GAAGGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACC 5761 Query 19071 AGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTA 19108 |||||||||||| || |||| |||||| ||||||| Sbjct 5760 GCTAAAGAATATACCCTCAACTGATGCAAACGCAACTA 5723 Score = 120 bits (132), Expect = 3e-22 Identities = 150/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 || ||||| |||||||| ||||| ||||| || || ||||| || || |||||| ||| Sbjct 4579 ACTAAATTCTCATTAACGATTCCGTCACTCGCAGCGAAAAACGCCAAAACATGTGATATA 4520 Query 19405 AAATGTTTTTCATCTGAGGTTAA-TGTATTCCAATCATTAATATCTTTAGATAAATCTAC 19463 ||||| ||||| || || | | | | |||||| | ||||| | ||||| || Sbjct 4519 AAATGACGTTCAT-TGTCATTGAGTCTGTGCCAATCGGTCATATCCCGACTCAAATCCAC 4461 Query 19464 TTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATA 19523 |||||| || |||||||| || ||||||||||| |||||||| |||| ||||| |||| Sbjct 4460 TTCTTCGACAGTCCAAAACGATGCCTCTGCTTTCTTATACATCATCCAAATATCGTGATA 4401 Query 19524 TTGTATAGGAAATATAACAAATC 19546 | || || || || || |||| Sbjct 4400 CTCAATCGGGAACATTACGAATC 4378 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18614 AAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTTTT 18673 |||| || |||||||| ||| || |||||| ||| |||||| || | |||| Sbjct 6523 AAAAGTCCGCATCCAAAACAAATTTATGCTCTTCTTTATTGGACATTACACCACTCTTTT 6464 Query 18674 GATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCA 18733 |||||||| | ||||| || ||||||||||| ||||| ||||| ||||| || ||||| Sbjct 6463 GATATTCGCCGACTCTCTTCTCAAAGAAATTCGTTTTCCCCTCCAATGAAATCTGTTCCA 6404 Query 18734 TAAAATCAAATGGATT 18749 | ||||| || ||||| Sbjct 6403 TGAAATCGAAAGGATT 6388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561121954764360