Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq20802 203 3e-46 seq21107 123 2e-22 seq35555 122 7e-22 seq14641 113 4e-19 seq32426 109 4e-18 seq48201 96.9 3e-14 seq68991 95.1 1e-13 seq14450 93.3 3e-13 >seq20802 Length=15485 Score = 203 bits (224), Expect = 3e-46 Identities = 382/556 (69%), Gaps = 17/556 (3%) Strand=Plus/Minus Query 368563 AATTGGCTCCAAAATTCAGTTGATTGGTGTATTTCAAGAAGTAGGTTTTGGGGAACTCCA 368622 |||||||||| || || |||||| |||||||| | || | |||||| || || Sbjct 4528 AATTGGCTCCGTGATGCAAGAGATTGGGCCATTTCAAGGAACAGATATTGGGGTACGCCC 4469 Query 368623 ATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAGAA 368682 ||||| | |||| ||||||||| || ||||| ||||| | || ||||| |||||| Sbjct 4468 ATTCCGTTGTGGATGAGTGATGATGGAGAGGAAATCATTTGTGTCGGGTCAATCAAAGAA 4409 Query 368683 TTGCAAGAATTATCTGGTGTGCAAAATATTAGTGATTTACATATTGATAAAATTGATCAC 368742 || |||||||| || |||||| |||||||||| ||| ||| | ||| | Sbjct 4408 TTAGCGGAATTATCGGGA---CAAAATGTTAGTGATTTGCATCGTGAAGTCGTGGATAAG 4352 Query 368743 ATTAAAATTCCATCAAAGAAAGGAAAAGGTTTATTGTCTCGAGTTGAAGGAGTTTTGGAT 368802 |||| || || || | | ||||| || |||| |||| | ||| || || Sbjct 4351 ATTATGATACCGTCGCAAATGGGAAAGGGACAATTGAAGAGAGTGAGTGAAGTGTTCGAC 4292 Query 368803 TGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTTGATAACGCA 368862 || |||||||| || |||||||| |||| ||| |||||||||||||| || Sbjct 4291 TGTTGGTTTGAGAGTGGGTCTATGCCCTATGCTCAGGCGCATTATCCATTTGAGAATCGG 4232 Query 368863 AAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAATCAATTGATCAA 368922 | | | ||||| | || ||| | ||| |||||| | | ||| ||||||||| Sbjct 4231 AGACAATTTGAGGA-GA-----ATTTTCCGGCCGATTTTATTGCCGAAGGAATTGATCAG 4178 Query 368923 ACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGATAAACCGGCT 368982 || || || ||||| ||||| || || ||| | || ||| | | |||| |||||| | Sbjct 4177 ACCCGAGGATGGTTCTATACTCTTTTGGTACTTTCGACATCACTCTTCGGTAAACCCCCA 4118 Query 368983 TTTAAAAATGT-AATAGTAACTGGTATTGTTAATGCATCTGATGGTCAAAAGATGTCAAA 369041 ||||| ||| | | | |||| |||| |||| |||||| || || ||||||||| || Sbjct 4117 TTTAAGAATTTGATTTGTAA-TGGTCTTGTACTTGCATCGGACGGGCAAAAGATGAGCAA 4059 Query 369042 AAGTAAGGGTAATTATTCCGATCCTA---ATATTTTAATTGATAAATTTGGTGCTGATAC 369098 |||||| | |||| | ||||||| | | ||| || |||||| |||||| ||| | Sbjct 4058 AAGTAAAAGGAATTTTCCCGATCCCATGGAAATT---GTTAATAAATATGGTGCCGATGC 4002 Query 369099 TTTGAGATTATACCTA 369114 | | | ||||||||| Sbjct 4001 TCTTCGTTTATACCTA 3986 >seq21107 Length=15695 Score = 123 bits (136), Expect = 2e-22 Identities = 165/224 (74%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAG 563311 ||||||||| | ||| | ||| || || ||||| |||||||||||| ||| |||| Sbjct 14164 CCTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATC-GCTGAGAG 14106 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | | || || | ||||||||| || ||||||||||| || ||||| || ||||||| Sbjct 14105 TCCGTCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGAATTC 14046 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCG 563430 | |||||||| ||||| || || || |||||| ||||| | | | | || ||| Sbjct 14045 CCTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAG-GGTTCCACTTCC 13987 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||| | ||||| || || ||||| |||||||| || ||||| Sbjct 13986 AAAGTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 114 bits (126), Expect = 1e-19 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 |||||| ||||| | || || | | |||||| |||||||||||||| ||||| | || Sbjct 13897 AATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAAATCAATCG 13838 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 |||||||| || ||||| || ||||||||||||||||| || || |||||| || Sbjct 13837 CTGCTGATCGGGGGGAATACCCTCTTTATCTTGAATTTTGGCCTTAACATTCTCAATGGT 13778 Query 563412 ATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 ||| | | | ||| | |||| ||||| || || ||||| || ||||| ||||| Sbjct 13777 ATCGCTCGGCTCAACTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTG 13718 Query 563472 CAT 563474 ||| Sbjct 13717 CAT 13715 Score = 100 bits (110), Expect = 2e-15 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 563286 TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAAT 563345 ||||| ||||| ||||| | || || | | |||||| |||||||| ||||| ||||| Sbjct 14746 TTTGG--ATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAAAAT 14689 Query 563346 AAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTC 563405 | || |||||||| || ||||| || ||||| ||||||||||| ||||| || Sbjct 14688 CAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTCTTGAATTTTGGCCTTTACATTTTC 14629 Query 563406 AATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAA 563465 || ||||| | | | ||| | |||| |||||||| || || ||||| || || Sbjct 14628 GATGGTATCGCTCGGTTCAACTTCCAATGTAATGGTTTTACCGGTGAGTGTTTTGACAAA 14569 Query 563466 AATTTGCAT 563474 |||||||| Sbjct 14568 GATTTGCAT 14560 Score = 100 bits (110), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| | || || ||||| || ||| || |||||| || || | ||||| | Sbjct 15005 AGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAGAGAGTACGG 14946 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || | ||||||||||||||| || || | |||||||| |||||||| || ||| Sbjct 14945 CCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCT 14886 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 |||||||||||||| ||| || || || ||||||| | | | || || | || Sbjct 14885 TTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAG-GGTTCCACCTCCAATGT 14827 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||||| || ||||| || ||||| || ||||| Sbjct 14826 GATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 >seq35555 Length=7338 Score = 122 bits (134), Expect = 7e-22 Identities = 388/597 (65%), Gaps = 6/597 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||||| | || ||||| ||||| ||||| | || ||| || | Sbjct 4899 GCGATTGGCATTGATTTGGATACGACATACTCATGTGTCGGTGTGTATCAGAATAATAGA 4958 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || ||||| |||||| ||| | | || || ||||| ||||| | ||||| Sbjct 4959 GTCGAGATAATTGCTAATGATTTAGGGAGTCGCACGACACCATCGTATGTCGCGTTCACC 5018 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | || ||||||| ||||| | || | |||| | ||| Sbjct 5019 GACACCCAAAGACTCGTCGGTGATGACGCAAAGAAACAGATGATGACGAATCAAAAGAAT 5078 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || |||| || || || | | || ||| | | || | |||| | || ||||||| Sbjct 5079 ACCGTTTTCGACGCGAAGAGACTCATCGGACGGAAGTTCACTGATACCACCGTTCAGGAG 5138 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || || ||||||||||| |||||| | || | | ||| || | ||| | | Sbjct 5139 GACATAAAGCATTGGCCATTCCAAGTGGTGTCGGACGGGGAAAAGCCAAAGATTATGGTT 5198 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | | || |||| |||| ||||| || ||| |||| || |||||||| | | Sbjct 5199 AATTATAAAGGGGAGAATAAAACATTTTTCCCCGAAGAAATATCCTCTATGGTACTGACT 5258 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAAC 550410 |||||||| ||| || || | ||| |||| |||| || || | || || | | Sbjct 5259 AAAATGAAGGAAATCGC-AGAGATTTATTTGGGAAAGACCGTCACTAACGCTGTCGTCGC 5317 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| || || ||||| |||||||| |||||||| || || ||||| || ||| || || Sbjct 5318 TGTCCCTGCCTATTTCAATGACTCCCAACGTCAGGCCACGAAAGAAGCCGGAGCCATCGC 5377 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 | || || || | || ||||||||||| | |||| | | |||| ||| | || Sbjct 5378 CAGTCTCAACGTGTTGAACATCATCAATGAACCGGCCGCTGTAGTATTTGCCTATCGTCT 5437 Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGTAAAAA 550587 ||| | | ||| || ||||||||||||| | ||||| ||| || || || Sbjct 5438 CTATA---AGAGCCCTCAGAAAATTAATGTACTCATATATGATT-TGGGGGGAAGAA 5490 >seq14641 Length=26203 Score = 113 bits (124), Expect = 4e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTA 550405 |||| |||||||| ||||||| || | | | |||| |||| | |||| || Sbjct 5459 TTAACCAAAATGAAGGAAACAGCAGAAGCATATTTGAATCAAACCGTTAAGAATGCCGTT 5518 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || |||||||| || ||||||||||||||||| ||||| || || |||||||| |||| Sbjct 5519 ATTACTGTACCCGCGTATTTTAATGACTCACAGCGTCAGGCCACGAAAGATGCCGGACAA 5578 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 || || || || |||||| | | |||| ||||| || || || || || |||| ||| Sbjct 5579 ATCGCGGGTCTCAATGTTTTGAGAGTTATTAATGAGCCGACCGCAGCCGCCATTGCGTAT 5638 Query 550526 GGACTTGATAAACATAATGATCAAG 550550 ||| | || ||| | | ||| ||| Sbjct 5639 GGAATGGACAAAACTGAGGATAAAG 5663 >seq32426 Length=2656 Score = 109 bits (120), Expect = 4e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| | || || ||||| || ||| || ||||||||| || | ||||| | Sbjct 216 AGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAGAGAGTACGG 275 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || | ||||||||||||||| || || | || ||||| |||||||| || ||| Sbjct 276 CCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGAATCCCCTCT 335 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 |||||||||||||| ||| || |||||| || || | | | | || ||| | ||| Sbjct 336 TTATCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAG-GGTTCCACTTCCAAAGT 394 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||| || | || ||||| ||||| |||||||| Sbjct 395 GATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 >seq48201 Length=1344 Score = 96.9 bits (106), Expect = 3e-14 Identities = 182/265 (69%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||||| ||||| ||||| |||| ||||| | ||| || ||| Sbjct 320 GCAATTGGCATTGATTTGGGAACGACATACTCATGTGCCGGTGTGTTTCAACTCGGGAAA 261 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || || |||||||| || | || || ||||| || || | || || Sbjct 260 GTCGAGATAATCATGAACGATCAAGGGAATCGTACGACGCCATCATACGTCGCATTTACC 201 Query 550112 GAAACTGAAC-ATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || ||||||| | ||| | || ||||| || || |||| | | | ||||| || || Sbjct 200 GACACTGAACGACTTA-TCGGGGATGCCGCGAAGAATCAGGTCGCGATGAATCCCACGAA 142 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| | || ||||| || | |||| || | || || |||| | |||||||| Sbjct 141 TACAGTCTTCGATGCGAAGAGACTAATCGGGCGGAGGTTCGATGACACCTTTGTTCAGGA 82 Query 550231 AGATATGAAGCATTGGCCTTTCCAA 550255 |||||||||| ||||||||||||| Sbjct 81 GGATATGAAGCTTTGGCCTTTCCAA 57 >seq68991 Length=328 Score = 95.1 bits (104), Expect = 1e-13 Identities = 118/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| | ||||||||||||||| || || | || ||||| || ||||| |||||||| Sbjct 16 ATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCTTT 75 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGTA 563436 || || ||||| ||| || || || ||||| || || | || ||| | ||| Sbjct 76 GTCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCG-AC-TTCCAATGTA 133 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||||| || |||||||| ||||| |||||||| Sbjct 134 ATGGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 >seq14450 Length=5806 Score = 93.3 bits (102), Expect = 3e-13 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 ||||| |||||| ||||| | | ||||| | |||||| || || ||||| ||||| Sbjct 5287 ATATTATAATCACTCAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAAATGAGTCTC 5346 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 || ||||| || |||||||| |||||||| || || || || || |||||| ||| Sbjct 5347 TGTTGATCCGGGGGAATTCCCTCTTTATCCTGTATCTTCGCCTTAACATTCTCAATGGTA 5406 Query 563413 TCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 |||| | | || ||| | ||| | || || || || | || |||||||||||||| Sbjct 5407 TCAGACGGT-TCCACTTCCAAAGTGATGGTCTTTCCCGTTAATGTCTTAACGAAAATTTG 5465 Query 563472 CAT 563474 ||| Sbjct 5466 CAT 5468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4021868423455010