Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq21474 122 1e-22 seq21782 87.8 2e-12 >seq21474 Length=6928 Score = 122 bits (134), Expect = 1e-22 Identities = 221/323 (68%), Gaps = 8/323 (2%) Strand=Plus/Minus Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 ||| || ||| |||| |||||| ||| ||| || |||| ||||| || ||| || Sbjct 6036 ATCAGCGACATATTCAATGTATGACTTCATCAGTACACAGTTCATACCGATGAGTGCGAC 5977 Query 37070 TGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAAC 37129 |||| |||||| | ||| | ||| || | ||||| || |||| ||| | Sbjct 5976 CGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACAGCTTCAGTAACAATACGAGT 5917 Query 37130 AATAACTTCTTCAGTTGGGGGATATTTTAA----ATATTTAAACAATAAACATGCAAAAT 37185 || ||| | ||||| | | |||| || |||||| | |||||| || |||| Sbjct 5916 GATTTGTTCGACCGTTGG----TTTATTAACGATATGTTTAAAGAGTAAACACGCGAAAT 5861 Query 37186 CACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTA 37245 ||||||| | || ||||| | ||||| ||||||| ||||| ||||| ||||| | Sbjct 5860 CACAATGAAGTCCCTCATCACGTGATATCAGTTCATTACTGAAGGTCAATCCCGGCATAA 5801 Query 37246 AACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAA 37305 || | ||| || | ||||||||||| || || || || |||||| ||||| |||| Sbjct 5800 GTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCGCTAAAGAATATACCCTCAA 5741 Query 37306 CTGCTGCAAATGCTACAAGACGT 37328 ||| |||||| || || | |||| Sbjct 5740 CTGATGCAAACGCAACTAAACGT 5718 >seq21782 Length=3065 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351 ||||||||||||||||| || | ||| ||||||| | ||| | || ||||| || | Sbjct 1906 TTTTACATACAAAATTTATAATTATCGATTCTAAACATTTGTATGTCGGGAGTGCGAACA 1847 Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAAT 153404 |||||||||||||||| || || || |||||| | || || | |||| |||| Sbjct 1846 TGGATTGGAGATCACTGACACATGTGAAAGAACTCGGAATGTCCATTTTTAAT 1794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591276921221960