Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq20802 152 3e-31 seq68991 118 7e-21 seq103556 116 2e-20 seq14641 116 2e-20 seq21107 105 4e-17 seq16054 105 4e-17 seq23784 93.3 3e-13 >seq20802 Length=15485 Score = 152 bits (168), Expect = 3e-31 Identities = 353/527 (67%), Gaps = 19/527 (4%) Strand=Plus/Minus Query 297112 GATTGGTGTATTTCAAGAAGTAGATATTGGGGAACACCAATTCCAATTTGGAAATCTGAT 297171 |||||| |||||||| | ||||||||||| || || ||||| | |||| |||| Sbjct 4507 GATTGGGCCATTTCAAGGAACAGATATTGGGGTACGCCCATTCCGTTGTGGATGAGTGAT 4448 Query 297172 GATGGTGAAGAAATAATTTGTATTGGTTCACTTGAAGAATTAAAAGAATTTTCAGGAATT 297231 ||||| || ||||| |||||| | || ||| | |||||||| ||||| || ||| Sbjct 4447 GATGGAGAGGAAATCATTTGTGTCGGGTCAATCAAAGAATTAGCGGAATTATCGGGAC-- 4390 Query 297232 GATAATATTAATGATTTACATATTGATAAAATTGATCAAATAAAAATTCCTTCTCGTAAA 297291 | ||| ||| |||||| ||| ||| | ||| | || | || || || | | Sbjct 4389 -AAAATGTTAGTGATTTGCATCGTGAAGTCGTGGATAAGATTATGATACCGTCGCAAATG 4331 Query 297292 GGAAAAGGCATGTTATCTCGTGTTACCGGTGTTTTAGATTGTTGGTTTGAATCAGGTTCT 297351 ||||| || || | || | | || || || ||||||||||| || ||| Sbjct 4330 GGAAAGGGACAATTGAAGAGAGTGAGTGAAGTGTTCGACTGTTGGTTTGAGAGTGGGTCT 4271 Query 297352 ATGCCTTATGGTCAAATTCATTATCCTTTTGAAAATTCCGAAATTTTAGACACTTC-ACA 297410 ||||| |||| ||| |||||||| ||||| ||| || | |||| || | Sbjct 4270 ATGCCCTATGCTCAGGCGCATTATCCATTTGAGAAT--CGGA------GACAATTTGAGG 4219 Query 297411 AGA-TTATATTGCAGATTTTATAACAGAATCAATTGATCAAACAAGAGGTTGGTTTTATA 297469 ||| || | || |||||||| | ||| ||||||||| || |||| ||||| |||| Sbjct 4218 AGAATTTTCCGGCCGATTTTATTGCCGAAGGAATTGATCAGACCCGAGGATGGTTCTATA 4159 Query 297470 CTTTATTAGTTCTTTCTACAGCTATATTTAACAAACCAGCATTTAAAAATGTAATTGTTA 297529 || | || || ||||| ||| | | || ||||| ||||||| ||| | ||| || Sbjct 4158 CTCTTTTGGTACTTTCGACATCACTCTTCGGTAAACCCCCATTTAAGAATTTGATTTGTA 4099 Query 297530 CAGGAATTGTTAACGCAGCTGATGGACAAAAAATGTCAAAAAGTAAAGGTAATTATCCTG 297589 || |||| ||| | || || ||||| ||| ||||||||| | |||| ||| | Sbjct 4098 ATGGTCTTGTACTTGCATCGGACGGGCAAAAGATGAGCAAAAGTAAAAGGAATTTTCCCG 4039 Query 297590 ATCCAA---ATATTTTGATGGATAAATATGGTGCAGATACTTTACGT 297633 |||| | | ||| | | ||||||||||||| ||| || | ||| Sbjct 4038 ATCCCATGGAAATTGTTA---ATAAATATGGTGCCGATGCTCTTCGT 3995 >seq68991 Length=328 Score = 118 bits (130), Expect = 7e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||| ||||| ||||| || ||||| |||||||| || ||||| ||||| || Sbjct 16 ATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCTTT 75 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || || || ||||||| ||| |||||||| | | || ||| | ||||| Sbjct 76 GTCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATGTAAT 135 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||||||||||||| || ||||| ||||| Sbjct 136 GGTTTTACCGGTGAGAGTTTTCACGAATATTTG 168 >seq103556 Length=230 Score = 116 bits (128), Expect = 2e-20 Identities = 149/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTG 474734 ||||||| || ||||||||| |||| || ||||| | ||| | ||||| | Sbjct 220 CAATGGTGTTGATCAAAATGAAGGAAACGGCAGAAGCATATTTGGGAAAGAAAGTATCAT 161 Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 | || || |||| || || || || ||||||||| | ||||| || ||||||||||||| Sbjct 160 ACGCTGTGGTTACGGTACCCGCGTACTTTAATGATGCACAACGACAGGCAACTAAAGATG 101 Query 474795 CGGGAAGAATTGCAGGTCTTAAT-GTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 | || ||| |||||| ||| | ||||| | ||||| || ||||| ||||| || || Sbjct 100 CCGGTGCAATCGCAGGT-TTAGTCGTTTTGCAGATTATCAACGAACCCACAGCTGCGGCC 42 Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876 ||||||||||||| || || || Sbjct 41 ATTGCTTATGGTCTCGACAAAAA 19 Score = 87.8 bits (96), Expect = 1e-11 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 290825 AGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCT 290884 |||||||| | | | || ||||| ||||| || ||||| || || | | |||| Sbjct 28 AGACCATAAGCAATGGCCGCAGCTGTGGGTTCGTTGATAATCTGCAAAACGACTAAACCT 87 Query 290885 GCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACT 290944 || ||| | | |||| ||||||||| ||||| ||||||||||| || || || || Sbjct 88 GCGATTGCACCGGCATCTTTAGTTGCCTGTCGTTGTGCATCATTAAAGTACGCGGGTACC 147 Query 290945 GTAATAACAGCtttttccactttctttttcaaataattttctgccatttgttttattt 291002 |||| ||||| | | ||||||||| |||||| ||||||| ||| || |||| Sbjct 148 GTAACCACAGCGTATGATACTTTCTTTCCCAAATATGCTTCTGCCGTTTCCTTCATTT 205 >seq14641 Length=26203 Score = 116 bits (128), Expect = 2e-20 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 474683 TTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGA-CAAGAAGTAACTGATGCAGT 474741 ||| |||||||||| |||| || ||||| ||| | ||| || | |||| || Sbjct 5459 TTAACCAAAATGAAGGAAACAGCAGAAGCATAT-TTGAATCAAACCGTTAAGAATGCCGT 5517 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 |||||||| || || ||||||||||| || || ||||| || || |||||||| ||| Sbjct 5518 TATTACTGTACCCGCGTATTTTAATGACTCACAGCGTCAGGCCACGAAAGATGCCGGACA 5577 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 ||| || ||||| |||||||| | |||||||||| || || |||||||| |||| || Sbjct 5578 AATCGCGGGTCTCAATGTTTTGAGAGTTATTAATGAGCCGACCGCAGCCGCCATTGCGTA 5637 Query 474862 TGG 474864 ||| Sbjct 5638 TGG 5640 >seq21107 Length=15695 Score = 105 bits (116), Expect = 4e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| | || || ||||| || ||| || || |||||| || | ||||| Sbjct 15008 CGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAGAGAGTA 14949 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | || || | ||| ||||| ||||| || ||||| || ||||| |||||||| || Sbjct 14948 CGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGAATCCCC 14889 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || || |||||||| || ||| || ||| || ||||||| | || || | Sbjct 14888 TCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACCTCCAAT 14829 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||||||||||||||| ||||| || || Sbjct 14828 GTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTG 14791 Score = 98.7 bits (108), Expect = 6e-15 Identities = 132/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 480590 AACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACG 480649 || ||||||||| | || || | |||||| ||||| ||||| || ||||| | || Sbjct 13897 AATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAAATCAATCG 13838 Query 480650 TTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGT 480709 || ||||| || ||||| || || || |||||||| || || ||| ||||| || Sbjct 13837 CTGCTGATCGGGGGGAATACCCTCTTTATCTTGAATTTTGGCCTTAACATTCTCAATGGT 13778 Query 480710 ATCAGTGTG-TGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTT 480768 ||| | | | || || ||| | |||| ||||| |||||||||||||| ||||| |||| Sbjct 13777 ATCGCTCGGCTCAACTTCCAATG-TAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTT 13719 Query 480769 G 480769 | Sbjct 13718 G 13718 Score = 98.7 bits (108), Expect = 6e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAGTTCT 480613 ||||| | ||| | ||| || || ||||| || ||| ||||| ||| ||||| | Sbjct 14160 AGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATC-GCTGAGAGTCCG 14102 Query 480614 GTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTC 480673 || || | ||| ||||| || |||||||| | |||||||| || |||||||| || Sbjct 14101 TCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGAATTCCCTC 14042 Query 480674 CTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGT 480733 || || |||||||| || ||| ||||| ||||| | | || ||| | || Sbjct 14041 TTTATCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCACTTCCAAAGT 13982 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| |||||||||||||||||||| || || Sbjct 13981 GATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTG 13946 Score = 91.5 bits (100), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAGT 480610 ||||| || ||||| | ||| || || ||||| || ||| ||||| ||| ||||| Sbjct 14391 CGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATC-GCTGAGAGT 14333 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || | ||| || || |||||||| | || || ||||| || |||||||| Sbjct 14332 CCGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCC 14273 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 || |||||||||||||| || || ||| |||||||||| || || | Sbjct 14272 CTCTTTGTCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAA 14213 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || |||||||| ||||| ||||| ||||| Sbjct 14212 TGTGATGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTG 14174 Score = 89.7 bits (98), Expect = 3e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||||||||| | || || | |||||| ||||| || || || ||||| | || || Sbjct 14739 ATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAAAATCAATCGCTG 14680 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| || ||||| || || ||||||||||| || || ||| ||| || ||||| Sbjct 14679 CTGATCGGGGGGAATACCCTCTTTGTCTTGAATTTTGGCCTTTACATTTTCGATGGTATC 14620 Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | ||| | ||||| |||||||||||||| || || || || ||||| Sbjct 14619 GCTCGGTTCAACTTCCAATGTAATGGTTTTACCGGTGAGTGTTTTGACAAAGATTTG 14563 >seq16054 Length=2514 Score = 105 bits (116), Expect = 4e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTG 474734 ||||||| || | ||||||||| |||| || ||||| | ||| |||| || Sbjct 1892 CAATGGTATTGACGAAAATGAAAGAAACGGCAGAAGCATATTTAGGAGTGAAAGTGACAC 1833 Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 | || || |||| || || || ||||| |||||| ||||||| || || || ||| ||| Sbjct 1832 ACGCTGTGGTTACGGTACCGGCGTATTTCAATGATGCTCAACGACAGGCGACCAAAAATG 1773 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||| || || | ||| || | | ||||| |||||||||||||| || || Sbjct 1772 CCGGTACAATCGCGGGCTTAAATATTATCAGAATTATCAATGAACCAACAGCTGCAGCCA 1713 Query 474855 TTGCTTATGGT 474865 ||||||||||| Sbjct 1712 TTGCTTATGGT 1702 >seq23784 Length=4682 Score = 93.3 bits (102), Expect = 3e-13 Identities = 117/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 474378 AAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATG 474437 ||||||| | ||| || |||||||| ||||| || || ||| | | |||||||||||| | Sbjct 1114 AAAATGGCAGAGTCGAGATAATTGCAAATGATCAGGGGAATCGTATAACACCATCATACG 1173 Query 474438 TTTCTTTT---ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCAT 474494 | | ||| |||||| ||||| ||||||||| ||| | || ||| |||| | | Sbjct 1174 TCGCATTTACAACTGAAGGTGAACGTCTTATTGGGGATACGGCAAAAAGTCAATTGACTT 1233 Query 474495 CTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGAT 474534 | || |||| ||||| || || | | |||| ||||||| Sbjct 1234 CGAACCCTGAAAATACGATATTCGGTATTAAACGATTGAT 1273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3262154660931452