Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq5884 154 2e-32 seq9998 107 3e-18 >seq5884 Length=32987 Score = 154 bits (170), Expect = 2e-32 Identities = 238/331 (72%), Gaps = 13/331 (4%) Strand=Plus/Plus Query 47758 TCAACAAACTGACGGACAGAATATTGATT-TCCTGTGGCAATAACAAAATCATCAGGTTC 47816 ||||| || | || ||||||| | |||| ||| || | ||| ||| |||| | ||| || Sbjct 22310 TCAACGAATTCCCGAACAGAATGT-GATTCTCCGGTTGAAATGACATAATCCTGAGGATC 22368 Query 47817 TTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACG 47876 || ||||| |||||| |||||| ||||| |||||||| | ||||| |||||||| || Sbjct 22369 GTCCTGTTGTAGCATTTTCCACATCGCCTCAACATAATCCTTCGCATGACCCCAGTCCCG 22428 Query 47877 AAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTT-- 47934 ||| || |||||||| || | ||| | || | | |||||| | |||| Sbjct 22429 TCGTGAGTCGAGATTTCCGAGTTCGAAATACTCCAATTCA--TTCAGATGTA--TTTTGG 22484 Query 47935 --AATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGAT 47992 | | | ||||| ||||| || ||||| ||| |||| || | || ||||| |||| Sbjct 22485 CGACGGAACGGGTAATTTTACGGGTAACAAATGTTGCACCGCGACGCGGTGATTCGTGAT 22544 Query 47993 TAAAAAGAATACCACT-ACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATC 48051 |||| | |||||| | |||| || |||| || | ||||||||| || | || ||| Sbjct 22545 TAAATAATATACCATTCACAG-CAAACATGTTATACGCTTCACGATAATTTATCACAATC 22603 Query 48052 CAGTACCCATAGAGTTTTGCAACACCATAAG 48082 || || |||||||||||||||||||| |||| Sbjct 22604 CAATATCCATAGAGTTTTGCAACACC-TAAG 22633 >seq9998 Length=203 Score = 107 bits (118), Expect = 3e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 48000 AATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCC 48059 |||||| |||||||||| || || || | || |||||||| | |||||||| | Sbjct 200 AATACCGTTACAGGCATAGATGCCATAAGCCTCGCGATAGTTAATCGTGATCCAGTAGGC 141 Query 48060 ATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGG 48119 ||| | |||||| ||| |||| || ||||||||| || || || || ||| | || || Sbjct 140 ATACATTTTTGCTACAGCATAGGGGCTACGTGGATAAAACGGCGTTGTTTCTTTTTGCGG 81 Query 48120 AGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGA 48171 | ||||| || ||||||||||||| ||||||||||| |||| |||| Sbjct 80 TATTTCTTGAACTAAACCATAAAGTTCAGATGTGGATGCTTGGTAGAAACGA 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664326049712680